Os04g0527700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CHCH domain containing protein.
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Os04g0527700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CHCH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 119.13 | 0.513 | 10.2 | 0.147 | 0.711 | 1.91 | 0.375 | -3.83 | -0.0838 | 14.4 | 50.97 | 1049 | -- | -- |
| 120.44 | 0.511 | 10.3 | -0.0255 | 0.711 | 0.93 | 0.245 | -- | -0.0928 | 14.5 | 52 | 1001 | -- | -- |
| 119.02 | 0.508 | 10.2 | 0.144 | 0.714 | 1.97 | -- | -3.77 | -0.0833 | 14.5 | 50.94 | 891 | -- | -- |
| 119.85 | 0.51 | 10.3 | -0.0362 | 0.731 | 0.812 | -- | -- | -0.0903 | 14.6 | 55.92 | 1016 | -- | -- |
| 147.81 | 0.566 | 10.2 | 0.197 | -- | 2.45 | -- | -4.6 | -0.124 | -- | 50.06 | 911 | -- | -- |
| 135.7 | 0.546 | 10.3 | -0.207 | 0.816 | -- | 0.418 | -- | 0.0202 | 14.2 | -- | -- | -- | -- |
| 136.35 | 0.547 | 10.3 | -0.195 | 0.818 | -- | -- | -- | 0.0228 | 14.3 | -- | -- | -- | -- |
| 147.95 | 0.566 | 10.3 | -0.0614 | -- | 0.923 | -- | -- | -0.119 | -- | 55.97 | 1046 | -- | -- |
| 119.69 | 0.51 | 10.3 | -- | 0.707 | 0.78 | -- | -- | -0.0982 | 14.6 | 55.6 | 1046 | -- | -- |
| 176.14 | 0.62 | 10.3 | -0.229 | -- | -- | -- | -- | 0.00291 | -- | -- | -- | -- | -- |
| 137.35 | 0.548 | 10.3 | -- | 0.822 | -- | -- | -- | 0.0444 | 14.3 | -- | -- | -- | -- |
| 147.79 | 0.566 | 10.3 | -- | -- | 0.976 | -- | -- | -0.15 | -- | 56 | 1066 | -- | -- |
| 177.53 | 0.622 | 10.3 | -- | -- | -- | -- | -- | 0.0283 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 114.20 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 3 |
| 13 | 114.26 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 27 | 114.48 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 48 | 114.74 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 8 |
| 55 | 114.80 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 57 | 114.80 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 5 |
| 59 | 114.91 | humidity | 70 | 720 | < th | dose dependent | rect. | 18 | 2 |
| 114 | 115.89 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 14 |
| 130 | 116.29 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 181 | 117.00 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 6 |
| 190 | 117.18 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 252 | 117.54 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 291 | 117.82 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 292 | 117.82 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 4 |
| 310 | 117.92 | humidity | 90 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 316 | 118.03 | wind | 1 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 317 | 118.04 | radiation | 10 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 338 | 118.22 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 345 | 118.42 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 351 | 118.55 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 8 |
| 359 | 118.63 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 23 | 8 |
| 369 | 118.78 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 372 | 118.80 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 376 | 118.83 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 3 | 6 |
| 396 | 118.87 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 427 | 119.13 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 439 | 119.23 | wind | 1 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 449 | 119.36 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 1 |
| 486 | 119.73 | humidity | 80 | 720 | < th | dose dependent | sin | 13 | NA |
| 493 | 119.79 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 499 | 119.85 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 526 | 120.01 | radiation | 40 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 529 | 120.04 | wind | 1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 559 | 120.36 | humidity | 60 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 561 | 120.38 | wind | 1 | 1440 | < th | dose independent | rect. | 6 | 4 |
| 595 | 120.58 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 596 | 120.60 | wind | 3 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 683 | 120.81 | radiation | 40 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 707 | 120.88 | wind | 1 | 1440 | > th | dose independent | rect. | 6 | 4 |
| 718 | 120.96 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 15 |
| 719 | 120.96 | humidity | 80 | 4320 | > th | dose dependent | rect. | 6 | 6 |
| 725 | 120.98 | humidity | 80 | 4320 | > th | dose dependent | rect. | 7 | 4 |
| 731 | 121.05 | humidity | 50 | 90 | > th | dose dependent | rect. | 19 | 8 |
| 745 | 121.06 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 15 |
| 750 | 121.08 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 18 | 15 |
| 825 | 121.21 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 845 | 121.23 | humidity | 50 | 1440 | > th | dose independent | rect. | 13 | 4 |
| 849 | 121.24 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 13 |
| 879 | 121.30 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 925 | 121.33 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 979 | 121.43 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 1 |