Os04g0527300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os04g0527300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 147.39 | 0.57 | 6.12 | 2.15 | 0.311 | 2.09 | 0.368 | -2.44 | -0.154 | 10.7 | 25.27 | 686 | -- | -- |
| 151.42 | 0.573 | 6.17 | 1.74 | 0.536 | 2.46 | -0.321 | -- | -0.284 | 12.1 | 24 | 435 | -- | -- |
| 145.32 | 0.561 | 6.12 | 2.11 | 0.488 | 2.17 | -- | -2.24 | -0.147 | 12.6 | 25.48 | 462 | -- | -- |
| 151.8 | 0.574 | 6.17 | 1.71 | 0.529 | 2.44 | -- | -- | -0.292 | 11.8 | 24 | 437 | -- | -- |
| 152.38 | 0.575 | 6.12 | 2.19 | -- | 2.27 | -- | -2.23 | -0.106 | -- | 25.9 | 717 | -- | -- |
| 232.69 | 0.715 | 6.27 | 1.11 | 0.616 | -- | -0.199 | -- | -0.725 | 10.6 | -- | -- | -- | -- |
| 232.84 | 0.715 | 6.27 | 1.1 | 0.618 | -- | -- | -- | -0.726 | 10.5 | -- | -- | -- | -- |
| 159.16 | 0.588 | 6.16 | 1.78 | -- | 2.43 | -- | -- | -0.2 | -- | 25.6 | 718 | -- | -- |
| 220.5 | 0.692 | 6.24 | -- | 0.548 | 1.69 | -- | -- | -0.598 | 11.3 | 24.04 | 405 | -- | -- |
| 256.29 | 0.748 | 6.28 | 1.09 | -- | -- | -- | -- | -0.729 | -- | -- | -- | -- | -- |
| 264.72 | 0.761 | 6.29 | -- | 0.612 | -- | -- | -- | -0.849 | 10.4 | -- | -- | -- | -- |
| 232.79 | 0.711 | 6.23 | -- | -- | 1.74 | -- | -- | -0.507 | -- | 25.7 | 667 | -- | -- |
| 287.57 | 0.792 | 6.31 | -- | -- | -- | -- | -- | -0.849 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 139.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 3 | 139.64 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 51 | 141.41 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 74 | 141.79 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 10 |
| 151 | 142.72 | temperature | 15 | 720 | > th | dose dependent | sin | 11 | NA |
| 156 | 142.75 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 429 | 145.27 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 456 | 145.48 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 491 | 145.71 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 527 | 146.00 | temperature | 15 | 720 | > th | dose dependent | rect. | 11 | 22 |
| 653 | 146.98 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 14 |
| 669 | 147.11 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 685 | 147.24 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 5 |
| 703 | 147.38 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 11 |
| 711 | 147.44 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 731 | 147.61 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 762 | 147.82 | temperature | 25 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 763 | 147.83 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 774 | 147.87 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 777 | 147.90 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 790 | 147.97 | humidity | 90 | 14400 | > th | dose dependent | sin | 13 | NA |
| 811 | 148.04 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 877 | 148.39 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 957 | 148.75 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |