Os04g0524900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Metal-nicotianamine transporter YSL2.
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Os04g0524900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Metal-nicotianamine transporter YSL2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 437.94 | 0.983 | 3.01 | 0.257 | 0.086 | 0.597 | -0.0813 | 5.58 | -0.184 | 23.6 | 30.22 | 94 | 5.9 | -- |
| 456.26 | 0.995 | 3.02 | 0.265 | 0.0726 | 0.926 | -0.733 | -- | -0.208 | 22.7 | 30.23 | 94 | 5.63 | -- |
| 437.96 | 0.975 | 3 | 0.259 | 0.0867 | 0.597 | -- | 5.65 | -0.184 | 23.4 | 30.23 | 93 | 5.89 | -- |
| 458.67 | 0.997 | 3.02 | 0.253 | 0.12 | 1.03 | -- | -- | -0.207 | 22.9 | 30.25 | 93 | 5.61 | -- |
| 438.38 | 0.975 | 3 | 0.264 | -- | 0.527 | -- | 5.68 | -0.182 | -- | 30.26 | 93 | 5.9 | -- |
| 464.77 | 1.01 | 3.01 | 0.241 | 0.0308 | -- | 0.866 | -- | -0.194 | 11.7 | -- | -- | -- | -- |
| 467.97 | 1.01 | 3.01 | 0.277 | 0.0402 | -- | -- | -- | -0.189 | 14.9 | -- | -- | -- | -- |
| 459.49 | 0.998 | 3.01 | 0.251 | -- | 0.92 | -- | -- | -0.202 | -- | 30.26 | 93 | 5.66 | -- |
| 460.25 | 0.999 | 3.03 | -- | 0.128 | 1.06 | -- | -- | -0.233 | 23.3 | 30.26 | 93 | 5.63 | -- |
| 468.07 | 1.01 | 3.01 | 0.276 | -- | -- | -- | -- | -0.19 | -- | -- | -- | -- | -- |
| 470 | 1.01 | 3.02 | -- | 0.0348 | -- | -- | -- | -0.22 | 14.9 | -- | -- | -- | -- |
| 460.67 | 1 | 3.03 | -- | -- | 1.16 | -- | -- | -0.243 | -- | 33.4 | 87 | 5.41 | -- |
| 470.07 | 1.01 | 3.02 | -- | -- | -- | -- | -- | -0.221 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 433.66 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 5 | 435.79 | radiation | 30.0 | 90 | > th | dose independent | rect. | 8 | 1 |
| 22 | 436.92 | temperature | 25.0 | 10 | > th | dose independent | rect. | 24 | 1 |
| 23 | 437.03 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 24 | 1 |
| 25 | 437.28 | radiation | 30.0 | 90 | > th | dose independent | rect. | 13 | 21 |
| 26 | 437.29 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 24 | 1 |
| 27 | 437.42 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 30 | 437.42 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 34 | 437.42 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 44 | 437.42 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 45 | 437.42 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 65 | 437.42 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 74 | 437.81 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 24 | 1 |
| 77 | 438.53 | radiation | 30.0 | 90 | > th | dose independent | rect. | 15 | 19 |
| 78 | 438.62 | radiation | 30.0 | 90 | > th | dose independent | sin | 12 | NA |
| 98 | 439.31 | wind | 1.0 | 30 | < th | dose dependent | rect. | 9 | 6 |
| 99 | 439.34 | humidity | 90.0 | 30 | < th | dose independent | rect. | 24 | 1 |
| 104 | 439.63 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 24 | 1 |
| 105 | 439.74 | wind | 1.0 | 10 | < th | dose independent | rect. | 14 | 4 |
| 111 | 439.77 | wind | 1.0 | 10 | < th | dose dependent | rect. | 14 | 4 |
| 118 | 439.85 | wind | 1.0 | 10 | < th | dose independent | rect. | 12 | 3 |
| 120 | 439.89 | wind | 1.0 | 10 | < th | dose dependent | rect. | 12 | 3 |
| 122 | 439.98 | wind | 1.0 | 10 | < th | dose independent | rect. | 14 | 2 |
| 125 | 439.98 | wind | 1.0 | 10 | < th | dose dependent | rect. | 14 | 2 |
| 152 | 440.22 | radiation | 20.0 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 173 | 440.29 | wind | 1.0 | 90 | < th | dose independent | rect. | 12 | 1 |
| 175 | 440.34 | wind | 1.0 | 90 | < th | dose dependent | rect. | 12 | 2 |
| 185 | 440.58 | wind | 3.0 | 30 | < th | dose independent | rect. | 24 | 1 |
| 215 | 440.94 | wind | 7.0 | 30 | < th | dose independent | rect. | 24 | 1 |
| 217 | 440.94 | temperature | 10.0 | 30 | > th | dose independent | rect. | 24 | 1 |
| 218 | 440.94 | temperature | 30.0 | 30 | < th | dose independent | rect. | 24 | 1 |
| 219 | 440.94 | humidity | 50.0 | 30 | > th | dose independent | rect. | 24 | 1 |
| 223 | 440.94 | radiation | 1.0 | 30 | < th | dose independent | rect. | 24 | 1 |
| 228 | 440.94 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 24 | 1 |
| 229 | 440.94 | temperature | 10.0 | 30 | > th | dose independent | rect. | 1 | 23 |
| 230 | 440.94 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 24 | 1 |
| 235 | 440.94 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 24 | 1 |
| 247 | 441.04 | wind | 9.0 | 30 | < th | dose dependent | rect. | 24 | 1 |
| 255 | 441.14 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 24 | 1 |
| 272 | 441.33 | wind | 1.0 | 30 | > th | dose independent | rect. | 24 | 1 |
| 301 | 441.45 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 24 | 1 |
| 317 | 441.57 | wind | 1.0 | 10 | < th | dose independent | rect. | 9 | 6 |
| 385 | 442.17 | wind | 1.0 | 90 | < th | dose independent | rect. | 8 | 6 |
| 388 | 442.22 | wind | 1.0 | 30 | > th | dose dependent | rect. | 24 | 1 |
| 451 | 442.42 | radiation | 30.0 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 534 | 443.12 | radiation | 30.0 | 90 | < th | dose independent | sin | 12 | NA |
| 683 | 445.32 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 24 | 1 |
| 694 | 445.67 | wind | 1.0 | 90 | < th | dose dependent | rect. | 9 | 1 |
| 724 | 445.99 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 24 | 4 |
| 725 | 446.01 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 9 | 1 |
| 732 | 446.10 | humidity | 50.0 | 30 | > th | dose independent | rect. | 1 | 23 |
| 739 | 446.17 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 24 | 1 |
| 761 | 446.44 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 24 | 6 |
| 800 | 446.93 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 1 | 23 |
| 801 | 446.93 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 855 | 447.60 | humidity | 70.0 | 10 | < th | dose independent | rect. | 18 | 16 |
| 880 | 447.79 | radiation | 20.0 | 90 | > th | dose dependent | sin | 12 | NA |
| 883 | 447.81 | wind | 1.0 | 90 | < th | dose independent | rect. | 9 | 1 |
| 891 | 447.90 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 1 | 1 |
| 898 | 447.90 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 1 | 1 |
| 984 | 448.39 | wind | 1.0 | 30 | < th | dose independent | sin | 22 | NA |
| 986 | 448.44 | humidity | 70.0 | 10 | < th | dose independent | rect. | 16 | 18 |
| 987 | 448.44 | wind | 1.0 | 30 | < th | dose dependent | sin | 22 | NA |