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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0524700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.85 (0.0192) R2 : 0.0194
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.121 (0.0404) R2dN8 : 0.025 R2N8 : 0.0194
σ : 0.361
deviance : 59.81
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
53.56 0.344 2.88 -0.167 0.0668 0.761 -0.202 -2.46 0.147 3.77 0.0004788 2997 -- --
57.27 0.352 2.84 -0.189 0.0485 0.479 -0.229 -- 0.141 3.78 0.3453 3297 -- --
53.66 0.341 2.88 -0.163 0.0674 0.755 -- -2.46 0.148 2.71 0.3076 2996 -- --
57.38 0.353 2.84 -0.188 0.0431 0.453 -- -- 0.139 4.11 0.3266 3297 -- --
53.91 0.342 2.88 -0.16 -- 0.742 -- -2.4 0.149 -- 0.2897 2996 -- --
59.25 0.361 2.85 -0.103 0.0389 -- -0.273 -- 0.108 6.51 -- -- -- --
59.4 0.361 2.85 -0.108 0.0443 -- -- -- 0.108 4.52 -- -- -- --
57.48 0.353 2.84 -0.187 -- 0.453 -- -- 0.14 -- 0.3272 3295 -- --
58.23 0.355 2.84 -- 0.0392 0.373 -- -- 0.153 3.94 0.3778 3370 -- --
59.51 0.36 2.85 -0.106 -- -- -- -- 0.109 -- -- -- -- --
59.71 0.361 2.85 -- 0.0423 -- -- -- 0.12 4.58 -- -- -- --
58.32 0.356 2.84 -- -- 0.374 -- -- 0.154 -- 0.3797 3370 -- --
59.81 0.361 2.85 -- -- -- -- -- 0.121 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 51.73 temperature 20.0 30 > th dose independent rect. 2 1
2 51.75 atmosphere 1005.0 30 > th dose independent rect. 2 1
3 51.75 atmosphere 1005.0 30 > th dose dependent rect. 2 1
5 51.77 temperature 15.0 30 > th dose dependent rect. 2 1
9 51.80 wind 3.0 30 < th dose independent rect. 2 1
10 51.82 humidity 80.0 30 > th dose independent rect. 2 1
12 51.83 wind 5.0 30 < th dose dependent rect. 2 1
18 51.86 temperature 10.0 30 > th dose independent rect. 2 1
20 51.86 temperature 30.0 30 < th dose independent rect. 2 1
21 51.86 humidity 50.0 30 > th dose independent rect. 2 1
25 51.86 atmosphere 1010.0 30 < th dose independent rect. 2 1
27 51.86 radiation 1.0 30 < th dose independent rect. 2 1
32 51.86 precipitation 0.1 30 < th dose independent rect. 2 1
33 51.86 temperature 10.0 30 > th dose independent rect. 3 23
34 51.86 radiation 1.0 30 < th dose dependent rect. 2 1
39 51.86 precipitation 0.1 30 < th dose dependent rect. 2 1
40 51.87 humidity 50.0 30 > th dose dependent rect. 2 1
47 52.09 atmosphere 1015.0 30 < th dose dependent rect. 2 1
50 52.20 temperature 30.0 30 < th dose dependent rect. 2 1
54 52.36 wind 1.0 30 > th dose independent rect. 2 1
57 52.47 temperature 20.0 270 < th dose independent rect. 9 1
99 53.01 wind 1.0 90 < th dose independent rect. 9 2
104 53.90 wind 9.0 1440 < th dose independent rect. 3 1
105 53.90 temperature 10.0 1440 > th dose independent rect. 3 1
108 53.90 temperature 30.0 1440 < th dose independent rect. 3 1
112 53.90 humidity 50.0 1440 > th dose independent rect. 3 1
121 53.90 atmosphere 995.0 1440 > th dose independent rect. 3 1
122 53.90 radiation 1.0 1440 < th dose independent rect. 3 1
142 53.90 temperature 10.0 1440 > th dose independent rect. 4 23
145 53.90 radiation 1.0 1440 < th dose dependent rect. 3 1
155 53.90 radiation 10.0 43200 < th dose dependent rect. 3 1
169 54.04 humidity 60.0 1440 > th dose independent rect. 4 5
177 54.26 humidity 60.0 1440 > th dose independent rect. 22 11
180 54.36 wind 1.0 30 < th dose dependent rect. 9 3
186 54.44 atmosphere 995.0 30 > th dose independent rect. 3 23
189 54.54 humidity 60.0 270 < th dose independent rect. 8 1
216 54.54 humidity 60.0 90 < th dose independent rect. 18 15
217 54.54 humidity 60.0 270 < th dose dependent rect. 8 1
248 54.54 humidity 60.0 90 < th dose dependent rect. 18 15
250 54.55 humidity 60.0 30 < th dose independent rect. 9 1
309 54.55 humidity 60.0 10 < th dose dependent rect. 9 1
407 54.56 wind 1.0 10 < th dose dependent rect. 9 1
450 54.57 humidity 60.0 1440 > th dose independent rect. 20 13
478 54.59 wind 1.0 10 < th dose independent rect. 9 1
541 54.67 wind 9.0 30 < th dose independent rect. 3 23
548 54.68 humidity 60.0 1440 > th dose independent rect. 2 7
573 54.70 radiation 40.0 30 > th dose dependent rect. 9 1
651 54.75 precipitation 0.1 4320 < th dose independent rect. 11 1
652 54.75 precipitation 0.1 4320 < th dose dependent rect. 11 1
677 54.80 precipitation 0.1 30 < th dose independent rect. 3 23
678 54.80 precipitation 0.1 30 < th dose dependent rect. 3 23
679 54.81 precipitation 0.1 4320 > th dose independent rect. 21 1
684 54.83 precipitation 0.1 4320 > th dose independent rect. 11 1
688 54.83 precipitation 0.1 4320 > th dose dependent rect. 11 1
689 54.83 precipitation 0.1 4320 > th dose dependent rect. 21 1
704 54.84 wind 1.0 4320 < th dose dependent rect. 19 1
714 54.88 precipitation 0.1 4320 < th dose independent rect. 21 1
715 54.88 precipitation 0.1 4320 < th dose dependent rect. 21 1
737 54.93 precipitation 0.1 4320 > th dose independent rect. 8 1
738 54.93 precipitation 0.1 4320 > th dose dependent rect. 8 1
739 54.95 precipitation 0.1 4320 < th dose independent rect. 8 1
741 54.95 precipitation 0.1 4320 < th dose dependent rect. 8 1
784 55.07 temperature 20.0 1440 > th dose independent rect. 9 1
787 55.08 precipitation 0.1 4320 > th dose independent rect. 16 1
801 55.10 precipitation 0.1 4320 > th dose dependent rect. 16 1
806 55.11 humidity 90.0 720 < th dose independent rect. 3 1
807 55.11 precipitation 0.1 4320 < th dose independent rect. 16 1
809 55.11 precipitation 0.1 4320 < th dose dependent rect. 16 1
810 55.12 wind 1.0 4320 < th dose independent rect. 19 1
862 55.20 precipitation 0.1 4320 > th dose independent rect. 8 4
864 55.20 precipitation 0.1 4320 > th dose dependent rect. 8 4
888 55.24 precipitation 0.1 4320 < th dose independent rect. 8 4
891 55.24 precipitation 0.1 4320 < th dose dependent rect. 8 4
907 55.26 humidity 90.0 720 < th dose independent rect. 1 4
922 55.28 precipitation 0.1 4320 > th dose independent rect. 18 1
939 55.29 precipitation 0.1 4320 > th dose independent rect. 16 3
965 55.30 precipitation 0.1 4320 < th dose independent rect. 18 1
969 55.30 precipitation 0.1 4320 < th dose dependent rect. 18 1
977 55.33 precipitation 0.1 4320 < th dose independent rect. 16 3
980 55.33 precipitation 0.1 4320 < th dose dependent rect. 16 3