Os04g0524600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Oligopeptide transporter OPT superfamily protein.
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Os04g0524600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Oligopeptide transporter OPT superfamily protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 119.93 | 0.515 | 9.92 | 0.0487 | 0.63 | 1.62 | -0.958 | -1.04 | -0.367 | 7.22 | 21.21 | 3688 | -- | -- |
| 121.63 | 0.514 | 9.88 | 0.285 | 0.629 | 1.74 | -0.888 | -- | -0.31 | 7.18 | 21.24 | 3744 | -- | -- |
| 122.32 | 0.515 | 9.92 | 0.0444 | 0.633 | 1.63 | -- | -0.981 | -0.363 | 7.04 | 21.25 | 3654 | -- | -- |
| 123.81 | 0.518 | 9.88 | 0.269 | 0.631 | 1.74 | -- | -- | -0.309 | 7.08 | 21.28 | 3711 | -- | -- |
| 141.12 | 0.553 | 9.93 | 0.061 | -- | 1.68 | -- | -1.13 | -0.354 | -- | 20.68 | 2835 | -- | -- |
| 194.37 | 0.654 | 9.76 | 1.3 | 0.617 | -- | -0.998 | -- | 0.247 | 6.68 | -- | -- | -- | -- |
| 196.83 | 0.657 | 9.75 | 1.28 | 0.616 | -- | -- | -- | 0.249 | 6.48 | -- | -- | -- | -- |
| 142.25 | 0.555 | 9.88 | 0.306 | -- | 1.85 | -- | -- | -0.229 | -- | 20.4 | 2745 | -- | -- |
| 125.11 | 0.521 | 9.89 | -- | 0.637 | 1.87 | -- | -- | -0.37 | 7.08 | 21.3 | 3845 | -- | -- |
| 216.54 | 0.688 | 9.77 | 1.3 | -- | -- | -- | -- | 0.262 | -- | -- | -- | -- | -- |
| 240.1 | 0.725 | 9.79 | -- | 0.633 | -- | -- | -- | 0.106 | 6.36 | -- | -- | -- | -- |
| 143.61 | 0.558 | 9.89 | -- | -- | 2.02 | -- | -- | -0.29 | -- | 20.3 | 2780 | -- | -- |
| 260.9 | 0.754 | 9.8 | -- | -- | -- | -- | -- | 0.118 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 112.73 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 3 | 113.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 4 | 113.85 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 11 | 115.08 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 20 | 115.88 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 28 | 116.29 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 2 |
| 81 | 117.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 134 | 118.89 | temperature | 30 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 156 | 119.08 | temperature | 20 | 4320 | > th | dose dependent | sin | 2 | NA |
| 159 | 119.09 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 169 | 119.19 | temperature | 30 | 4320 | < th | dose dependent | rect. | 8 | 3 |
| 187 | 119.31 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 249 | 119.63 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 14 |
| 289 | 119.82 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 12 |
| 622 | 120.95 | temperature | 30 | 4320 | < th | dose dependent | sin | 3 | NA |
| 764 | 121.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 15 |
| 788 | 121.30 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 877 | 121.45 | temperature | 15 | 4320 | > th | dose dependent | no | NA | NA |