Os04g0524500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Oligopeptide transporter OPT superfamily protein.
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Os04g0524500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Oligopeptide transporter OPT superfamily protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 294.98 | 0.807 | 9.33 | 3.92 | 1.6 | -0.591 | -1.42 | -2.35 | 0.945 | 19.4 | 0.9524 | 683 | -- | -- |
| 300.24 | 0.807 | 9.29 | 3.88 | 1.57 | -0.709 | -1.01 | -- | 0.949 | 19.4 | 0.9 | 680 | -- | -- |
| 299.52 | 0.806 | 9.33 | 3.93 | 1.59 | -0.672 | -- | -1.94 | 0.938 | 19.4 | 0.7935 | 652 | -- | -- |
| 302.68 | 0.81 | 9.31 | 3.98 | 1.57 | -0.789 | -- | -- | 0.93 | 19.4 | 0.8 | 652 | -- | -- |
| 383.21 | 0.912 | 9.34 | 4.25 | -- | -1.29 | -- | -1.5 | 0.805 | -- | 2.9 | 466 | -- | -- |
| 311.26 | 0.827 | 9.28 | 3.78 | 1.73 | -- | -0.88 | -- | 1.03 | 19.5 | -- | -- | -- | -- |
| 313.4 | 0.829 | 9.29 | 3.8 | 1.73 | -- | -- | -- | 1.03 | 19.6 | -- | -- | -- | -- |
| 376.97 | 0.904 | 9.25 | 4.38 | -- | -1.53 | -- | -- | 0.951 | -- | 2.7 | 465 | -- | -- |
| 540 | 1.08 | 9.24 | -- | 2.1 | 2 | -- | -- | 0.647 | 18.9 | 4.888 | 20516 | -- | -- |
| 474.26 | 1.02 | 9.24 | 3.77 | -- | -- | -- | -- | 1 | -- | -- | -- | -- | -- |
| 693.49 | 1.23 | 9.38 | -- | 1.7 | -- | -- | -- | 0.606 | 19.7 | -- | -- | -- | -- |
| 572.26 | 1.11 | 9.47 | -- | -- | 2.78 | -- | -- | -0.00941 | -- | 6.838 | 47520 | -- | -- |
| 849.63 | 1.36 | 9.34 | -- | -- | -- | -- | -- | 0.584 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 275.69 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 3 | 275.89 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 6 | 278.60 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 14 |
| 9 | 278.79 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 14 |
| 13 | 279.07 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 11 |
| 15 | 279.12 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 11 |
| 19 | 279.24 | wind | 3.0 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 30 | 279.45 | wind | 3.0 | 14400 | < th | dose independent | rect. | 19 | 17 |
| 33 | 279.59 | wind | 3.0 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 39 | 279.69 | wind | 3.0 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 40 | 279.72 | wind | 3.0 | 14400 | < th | dose independent | sin | 8 | NA |
| 50 | 279.84 | wind | 3.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 51 | 279.84 | wind | 3.0 | 14400 | > th | dose independent | rect. | 19 | 17 |
| 55 | 279.87 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 6 |
| 56 | 279.88 | wind | 3.0 | 14400 | > th | dose independent | rect. | 19 | 14 |
| 62 | 279.96 | wind | 3.0 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 64 | 280.00 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 6 |
| 80 | 280.24 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 122 | 280.84 | wind | 3.0 | 14400 | < th | dose independent | rect. | 19 | 9 |
| 163 | 281.40 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 169 | 281.48 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 278 | 283.40 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 363 | 285.28 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 2 |
| 367 | 285.37 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 15 |
| 373 | 285.56 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 19 | 16 |
| 389 | 285.80 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 394 | 285.83 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 398 | 285.97 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 21 | 7 |
| 399 | 286.00 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 11 |
| 457 | 286.58 | wind | 3.0 | 14400 | < th | dose dependent | sin | 8 | NA |
| 469 | 286.70 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 14 |
| 479 | 286.78 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 5 | 6 |
| 481 | 286.79 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 3 | 9 |
| 508 | 286.93 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 517 | 287.03 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 6 |
| 599 | 287.63 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 622 | 287.74 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 21 | 10 |
| 624 | 287.75 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 11 |
| 645 | 287.89 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 692 | 288.26 | wind | 1.0 | 14400 | > th | dose dependent | sin | 7 | NA |
| 740 | 288.48 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 764 | 288.63 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 6 |
| 776 | 288.71 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 787 | 288.76 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 5 |
| 798 | 288.82 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 6 | 5 |
| 799 | 288.82 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 5 | 7 |
| 807 | 288.85 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 5 |
| 809 | 288.85 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 4 |
| 810 | 288.85 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 5 |
| 823 | 288.91 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 840 | 288.97 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 5 |
| 913 | 289.28 | wind | 1.0 | 720 | < th | dose independent | rect. | 4 | 21 |
| 922 | 289.29 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 21 | 10 |
| 924 | 289.30 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 925 | 289.30 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 6 | 2 |
| 926 | 289.31 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 6 |