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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0523200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Up-frameshift suppressor 2 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0443) R2 : 0.161
β1 : 0.868 (0.158) R2dD : 0.0644 R2D : -0.0189
β2 : -- (--) R2dC : -- R2C : --
β3 : 19.3 (2.41) R2dE : 3.63 R2E : -2.91
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 42.6 (5.92) R2dD*E : 2.93 R2D*E : -3.4
γ1 : -0.0287 (0.0877) R2dN8 : 0.000282 R2N8 : -0.0199
σ : 0.766
deviance : 270.6
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.098
memory length : 30
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6
open length of G : 1.5

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
269.63 0.772 3.04 0.864 0.0148 19.6 0.6 43.7 -0.0347 16.2 1.06 30 6 1.5
312.91 0.83 2.93 0.44 0.0822 -0.0879 -1.1 -- -0.0764 5.13 1.149 19 8.02 5.68
270.53 0.766 3.04 0.88 0.035 19.6 -- 43.5 -0.0313 11.8 1.08 30 6.01 1.5
313.77 0.825 2.92 0.48 0.198 -0.391 -- -- -0.113 9.2 32.83 126 8.03 6.14
270.6 0.766 3.04 0.868 -- 19.3 -- 42.6 -0.0287 -- 1.098 30 6 1.5
312.92 0.829 2.93 0.441 0.0823 -- -1.1 -- -0.076 5.12 -- -- -- --
315.85 0.832 2.92 0.443 0.092 -- -- -- -0.0704 7.3 -- -- -- --
315.02 0.827 2.93 0.429 -- -0.262 -- -- -0.0905 -- 28.63 126 8.05 6.48
317.98 0.831 2.94 -- 0.184 -0.426 -- -- -0.151 10.1 28.48 126 8.03 7.02
316.29 0.831 2.92 0.444 -- -- -- -- -0.0689 -- -- -- -- --
321.01 0.838 2.93 -- 0.0966 -- -- -- -0.12 7 -- -- -- --
319.57 0.833 2.94 -- -- -0.344 -- -- -0.147 -- 25.25 126 8.03 7.02
321.5 0.837 2.94 -- -- -- -- -- -0.118 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 269.79 radiation 1.0 10 < th dose dependent rect. 6 1
3 275.65 radiation 1.0 10 < th dose independent rect. 6 1
5 276.90 wind 3.0 90 > th dose dependent rect. 5 2
7 278.58 wind 5.0 10 > th dose dependent rect. 24 9
8 279.14 wind 5.0 10 > th dose independent rect. 8 1
10 279.14 temperature 20.0 30 < th dose independent rect. 7 1
13 279.14 wind 5.0 10 > th dose dependent rect. 8 1
15 279.14 temperature 20.0 30 < th dose dependent rect. 7 1
18 279.16 temperature 20.0 10 < th dose independent rect. 7 11
22 279.20 temperature 20.0 10 < th dose independent rect. 7 9
44 279.25 temperature 20.0 10 < th dose independent rect. 7 7
68 279.35 temperature 20.0 10 < th dose dependent rect. 7 7
133 280.48 wind 5.0 10 > th dose independent rect. 24 9
143 280.96 precipitation 0.1 270 > th dose independent rect. 18 2
144 280.96 precipitation 0.1 270 > th dose dependent rect. 18 2
177 286.38 wind 3.0 10 > th dose dependent rect. 24 1
185 288.37 precipitation 0.1 1440 > th dose independent rect. 22 1
186 288.37 precipitation 0.1 1440 > th dose dependent rect. 22 1
200 289.19 humidity 80.0 90 < th dose dependent rect. 6 1
202 289.27 wind 3.0 10 > th dose dependent rect. 19 14
204 289.35 wind 5.0 30 > th dose independent rect. 24 6
206 289.41 precipitation 0.1 90 > th dose independent rect. 22 3
207 289.41 precipitation 0.1 90 > th dose dependent rect. 22 3
210 289.53 wind 5.0 10 > th dose independent rect. 19 14
219 289.70 wind 5.0 90 > th dose independent rect. 23 1
221 289.90 wind 5.0 30 > th dose independent rect. 24 4
224 289.90 wind 5.0 30 > th dose dependent rect. 24 4
235 290.05 wind 5.0 10 > th dose independent rect. 24 2
261 290.48 precipitation 0.1 10 > th dose independent rect. 5 19
263 290.48 precipitation 0.1 10 > th dose dependent rect. 5 19
278 290.65 radiation 1.0 90 > th dose independent rect. 4 1
288 290.65 radiation 1.0 90 > th dose dependent rect. 4 1
299 290.90 precipitation 0.1 10 > th dose independent rect. 17 3
319 290.90 precipitation 0.1 10 > th dose dependent rect. 17 3
340 290.97 wind 3.0 90 > th dose independent rect. 5 2
343 291.17 wind 5.0 30 > th dose independent rect. 22 3
358 291.59 humidity 80.0 90 < th dose independent rect. 6 1
360 291.66 wind 5.0 30 > th dose independent rect. 22 6
388 292.31 wind 5.0 10 > th dose dependent rect. 22 6
411 293.14 radiation 10.0 720 < th dose dependent rect. 12 3
412 293.14 radiation 10.0 720 < th dose dependent rect. 12 12
413 293.16 precipitation 0.1 270 > th dose independent rect. 17 10
419 293.28 wind 3.0 10 > th dose dependent rect. 19 6
425 293.39 precipitation 0.1 270 > th dose independent rect. 17 6
434 293.49 precipitation 0.1 10 > th dose independent sin 19 NA
435 293.50 precipitation 0.1 10 > th dose dependent sin 19 NA
438 293.54 precipitation 0.1 10 > th dose independent rect. 17 7
459 293.54 precipitation 0.1 10 > th dose dependent rect. 17 7
483 293.58 radiation 1.0 720 < th dose independent rect. 15 1
485 293.58 wind 5.0 10 > th dose independent rect. 19 9
489 293.65 precipitation 0.1 10 < th dose independent sin 19 NA
490 293.65 precipitation 0.1 10 < th dose dependent sin 19 NA
506 293.70 wind 5.0 10 > th dose independent rect. 19 7
510 293.74 wind 5.0 10 < th dose independent sin 10 NA
512 293.79 precipitation 0.1 10 > th dose independent rect. 19 1
524 293.79 precipitation 0.1 10 > th dose dependent rect. 19 1
536 293.83 precipitation 0.1 270 > th dose dependent rect. 18 9
546 293.91 precipitation 0.1 90 > th dose dependent rect. 4 3
547 293.92 precipitation 0.1 30 > th dose independent rect. 4 4
604 293.98 wind 3.0 10 > th dose dependent rect. 6 1
613 293.98 precipitation 0.1 270 > th dose dependent rect. 18 5
663 294.08 wind 3.0 10 > th dose independent rect. 6 1
664 294.08 wind 3.0 10 > th dose dependent rect. 19 9
746 294.52 wind 5.0 10 > th dose independent rect. 5 4
748 294.53 radiation 10.0 720 < th dose independent rect. 12 1
767 294.65 wind 5.0 10 > th dose independent sin 10 NA
796 294.80 wind 1.0 10 < th dose dependent rect. 6 1
814 294.99 radiation 10.0 720 < th dose independent rect. 12 3
849 295.34 humidity 90.0 720 > th dose independent rect. 14 1
853 295.37 temperature 25.0 1440 < th dose dependent rect. 16 1
888 295.67 humidity 80.0 270 < th dose dependent rect. 4 3
897 295.77 humidity 80.0 270 < th dose independent rect. 4 3
900 295.81 precipitation 0.1 10 > th dose independent rect. 19 5
904 295.81 precipitation 0.1 10 > th dose dependent rect. 19 5
951 296.03 radiation 10.0 720 < th dose dependent sin 18 NA
952 296.04 humidity 80.0 1440 > th dose independent rect. 22 2
962 296.13 temperature 25.0 1440 < th dose dependent rect. 14 3
964 296.15 temperature 20.0 4320 > th dose independent rect. 22 1
970 296.16 humidity 80.0 1440 < th dose independent rect. 22 1
971 296.17 precipitation 0.1 1440 > th dose independent rect. 19 1
975 296.25 temperature 20.0 4320 < th dose independent rect. 22 1
991 296.39 temperature 20.0 30 > th dose independent rect. 5 1