Os04g0522900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os04g0522900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.83 | 0.225 | 11.8 | 1.35 | 0.414 | 0.444 | -0.594 | 1.88 | 0.234 | 17.6 | 1.929 | 9825 | -- | -- |
| 24.67 | 0.231 | 11.9 | 1.02 | 0.375 | 0.272 | -0.66 | -- | 0.123 | 17.4 | 24.69 | 9609 | -- | -- |
| 23.7 | 0.227 | 11.8 | 1.36 | 0.412 | 0.451 | -- | 1.93 | 0.235 | 17.7 | 1.138 | 9884 | -- | -- |
| 25.46 | 0.235 | 11.9 | 0.987 | 0.405 | 0.266 | -- | -- | 0.107 | 17.7 | 25.1 | 9755 | -- | -- |
| 32.16 | 0.264 | 11.8 | 1.35 | -- | 0.43 | -- | 1.91 | 0.229 | -- | 1.29 | 9235 | -- | -- |
| 27.13 | 0.244 | 11.9 | 1.1 | 0.4 | -- | -0.643 | -- | 0.209 | 17.8 | -- | -- | -- | -- |
| 28.13 | 0.248 | 11.9 | 1.1 | 0.397 | -- | -- | -- | 0.206 | 17.9 | -- | -- | -- | -- |
| 33.44 | 0.269 | 11.9 | 1.03 | -- | 0.258 | -- | -- | 0.118 | -- | 26.1 | 7823 | -- | -- |
| 30.62 | 0.258 | 12 | -- | 0.402 | 0.822 | -- | -- | -0.196 | 17.7 | 17.8 | 47520 | -- | -- |
| 36.29 | 0.281 | 11.9 | 1.09 | -- | -- | -- | -- | 0.197 | -- | -- | -- | -- | -- |
| 60.11 | 0.363 | 11.9 | -- | 0.38 | -- | -- | -- | 0.0837 | 18 | -- | -- | -- | -- |
| 39 | 0.291 | 12 | -- | -- | 0.809 | -- | -- | -0.2 | -- | 17.8 | 47520 | -- | -- |
| 67.61 | 0.384 | 11.9 | -- | -- | -- | -- | -- | 0.0763 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.83 | temperature | 20 | 14400 | < th | dose dependent | rect. | 20 | 4 |
| 4 | 21.87 | temperature | 25 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 9 | 21.93 | temperature | 20 | 14400 | > th | dose independent | sin | 22 | NA |
| 11 | 21.94 | temperature | 20 | 14400 | > th | dose independent | rect. | 5 | 18 |
| 16 | 21.96 | temperature | 20 | 14400 | < th | dose independent | rect. | 5 | 18 |
| 22 | 21.97 | temperature | 20 | 14400 | < th | dose independent | sin | 21 | NA |
| 34 | 21.98 | temperature | 20 | 14400 | > th | dose independent | rect. | 7 | 21 |
| 53 | 22.00 | temperature | 20 | 14400 | < th | dose independent | rect. | 7 | 21 |
| 57 | 22.01 | temperature | 20 | 14400 | < th | dose independent | rect. | 9 | 15 |
| 81 | 22.03 | wind | 1 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 93 | 22.04 | temperature | 20 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 169 | 22.10 | temperature | 20 | 14400 | > th | dose independent | no | NA | NA |
| 170 | 22.10 | temperature | 20 | 14400 | > th | dose independent | rect. | 11 | 9 |
| 176 | 22.10 | temperature | 20 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 194 | 22.11 | temperature | 20 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 198 | 22.11 | temperature | 20 | 14400 | > th | dose independent | rect. | 19 | 23 |
| 202 | 22.12 | temperature | 20 | 14400 | < th | dose independent | no | NA | NA |
| 236 | 22.13 | temperature | 20 | 14400 | < th | dose independent | rect. | 13 | 23 |
| 261 | 22.14 | temperature | 20 | 14400 | < th | dose independent | rect. | 11 | 23 |
| 296 | 22.16 | temperature | 20 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 297 | 22.16 | temperature | 20 | 14400 | < th | dose independent | rect. | 12 | 8 |
| 333 | 22.18 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 357 | 22.18 | temperature | 20 | 14400 | < th | dose dependent | sin | 18 | NA |
| 421 | 22.22 | temperature | 20 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 466 | 22.24 | wind | 1 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 483 | 22.24 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 2 |
| 491 | 22.25 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 8 |
| 512 | 22.26 | temperature | 20 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 545 | 22.28 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 567 | 22.29 | wind | 1 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 754 | 22.40 | wind | 1 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 798 | 22.42 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 6 |
| 827 | 22.43 | temperature | 20 | 14400 | > th | dose independent | rect. | 5 | 6 |
| 842 | 22.43 | wind | 1 | 43200 | < th | dose dependent | rect. | 18 | 14 |
| 949 | 22.49 | temperature | 20 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 962 | 22.49 | wind | 1 | 43200 | < th | dose dependent | rect. | 22 | 9 |
| 971 | 22.50 | temperature | 20 | 14400 | > th | dose independent | rect. | 6 | 3 |