Os04g0521700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0521700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 321.7 | 0.843 | 6.64 | 1.05 | 3.94 | -4.36 | 0.966 | -1.11 | 0.188 | 10.9 | 28.7 | 10 | 21.7 | -- |
| 323.5 | 0.838 | 6.65 | 0.945 | 3.91 | -4.27 | 0.737 | -- | 0.161 | 10.9 | 28.55 | 11 | 21.8 | -- |
| 324.92 | 0.84 | 6.64 | 1.03 | 3.94 | -4.45 | -- | -0.654 | 0.174 | 10.9 | 28.51 | 10 | 21.6 | -- |
| 325.58 | 0.84 | 6.65 | 0.968 | 3.94 | -4.39 | -- | -- | 0.161 | 11 | 28.53 | 10 | 21.6 | -- |
| 473.75 | 1.02 | 6.66 | 1.48 | -- | -4.99 | -- | -2.61 | 0.543 | -- | 44.95 | 8 | 5.57 | -- |
| 507.3 | 1.06 | 6.56 | 1.6 | 3.71 | -- | 1.65 | -- | 0.77 | 12.6 | -- | -- | -- | -- |
| 518.87 | 1.07 | 6.55 | 1.66 | 3.71 | -- | -- | -- | 0.779 | 12.6 | -- | -- | -- | -- |
| 492.26 | 1.04 | 6.65 | 1.46 | -- | -4.73 | -- | -- | 0.572 | -- | 50.26 | 7 | 5.5 | -- |
| 349.1 | 0.87 | 6.68 | -- | 3.89 | -4.62 | -- | -- | 0.034 | 10.8 | 28.55 | 13 | 21.8 | -- |
| 1381.72 | 1.74 | 6.62 | 1.53 | -- | -- | -- | -- | 0.715 | -- | -- | -- | -- | -- |
| 591.9 | 1.14 | 6.59 | -- | 3.69 | -- | -- | -- | 0.594 | 12.6 | -- | -- | -- | -- |
| 545.89 | 1.09 | 6.7 | -- | -- | -5.02 | -- | -- | 0.358 | -- | 43.97 | 9 | 5.54 | -- |
| 1443.77 | 1.77 | 6.66 | -- | -- | -- | -- | -- | 0.544 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 325.75 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 2 | 325.93 | temperature | 30 | 10 | < th | dose dependent | sin | 4 | NA |
| 8 | 329.77 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 21 |
| 10 | 330.86 | temperature | 15 | 30 | > th | dose dependent | sin | 5 | NA |
| 27 | 335.85 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 15 |
| 44 | 339.48 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 90 | 344.23 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 14 |
| 158 | 351.32 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 201 | 354.66 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 15 |
| 332 | 363.53 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 9 |
| 350 | 364.56 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 23 |
| 511 | 373.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 513 | 373.47 | temperature | 25 | 30 | < th | dose independent | rect. | 3 | 17 |
| 514 | 373.51 | temperature | 25 | 90 | < th | dose independent | rect. | 2 | 19 |
| 521 | 373.83 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 538 | 374.66 | humidity | 80 | 10 | > th | dose dependent | sin | 0 | NA |
| 557 | 375.60 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 22 |
| 570 | 376.17 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 595 | 377.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 601 | 377.22 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 605 | 377.35 | radiation | 1 | 270 | < th | dose dependent | sin | 3 | NA |
| 630 | 378.34 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 632 | 378.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 639 | 378.74 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 22 |
| 645 | 379.00 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 652 | 379.34 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 660 | 379.78 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 15 |
| 670 | 380.18 | temperature | 25 | 90 | < th | dose independent | rect. | 11 | 22 |
| 703 | 381.75 | radiation | 1 | 270 | < th | dose independent | sin | 3 | NA |
| 712 | 382.17 | temperature | 25 | 90 | < th | dose independent | rect. | 23 | 22 |
| 717 | 382.47 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 20 |
| 726 | 382.89 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 740 | 383.22 | radiation | 1 | 270 | > th | dose independent | sin | 3 | NA |
| 804 | 385.48 | temperature | 25 | 90 | < th | dose independent | sin | 6 | NA |
| 815 | 385.74 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 836 | 386.42 | humidity | 60 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 852 | 386.81 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 7 |
| 873 | 387.38 | humidity | 70 | 10 | > th | dose dependent | rect. | 3 | 15 |
| 885 | 387.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 7 |
| 907 | 388.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 7 |
| 978 | 389.75 | temperature | 25 | 90 | < th | dose independent | rect. | 9 | 23 |
| 989 | 389.93 | radiation | 1 | 270 | > th | dose independent | rect. | 17 | 22 |