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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0519700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Auxin response factor 10.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.35 (0.0408) R2 : 0.439
β1 : 1.65 (0.167) R2dD : 0.156 R2D : 0.268
β2 : 0.902 (0.101) R2dC : 0.0973 R2C : 0.0944
β3 : -1.26 (0.177) R2dE : 0.0849 R2E : 0.183
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0582 (0.0887) R2dN8 : 0.000598 R2N8 : -0.00672
σ : 0.76
deviance : 266.04
__
_____
C
peak time of C : 2.98
E
wheather : wind
threshold : 6.372
memory length : 5391
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
248.16 0.74 5.41 1.72 0.925 -1.14 2.14 1.68 -0.0113 3.14 4.976 5392 -- --
249.67 0.736 5.35 1.78 0.893 -1.16 2.2 -- 0.0529 3.08 6.302 5394 -- --
261.91 0.754 5.43 1.7 0.91 -1 -- 2.09 -0.0292 2.93 5.9 5396 -- --
266.04 0.76 5.35 1.65 0.902 -1.26 -- -- 0.0582 2.98 6.372 5391 -- --
308.25 0.818 5.44 1.75 -- -0.895 -- 2.22 -0.0517 -- 6 5356 -- --
276.28 0.779 5.38 2.22 0.851 -- 2.45 -- -0.0726 3.36 -- -- -- --
295.3 0.805 5.39 2.18 0.862 -- -- -- -0.0868 3.33 -- -- -- --
309.53 0.819 5.39 1.77 -- -1.22 -- -- -0.0934 -- 6.389 4636 -- --
315.65 0.827 5.32 -- 0.979 -2.14 -- -- 0.108 2.83 4.588 5706 -- --
337.24 0.858 5.39 2.21 -- -- -- -- -0.0641 -- -- -- -- --
420.16 0.959 5.44 -- 0.905 -- -- -- -0.329 3.33 -- -- -- --
361.56 0.886 5.33 -- -- -2.18 -- -- 0.0766 -- 4.95 5859 -- --
466.45 1.01 5.44 -- -- -- -- -- -0.31 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 240.18 humidity 60.0 14400 > th dose independent rect. 5 3
4 243.85 wind 7.0 4320 < th dose independent rect. 15 4
6 244.20 wind 7.0 4320 > th dose independent rect. 18 1
8 244.31 wind 7.0 4320 > th dose independent rect. 15 4
10 244.35 wind 5.0 4320 > th dose dependent rect. 15 1
14 244.86 wind 5.0 4320 > th dose dependent rect. 15 4
15 244.86 wind 5.0 4320 > th dose dependent rect. 14 7
26 245.30 wind 5.0 4320 > th dose independent rect. 13 9
28 245.36 wind 5.0 4320 > th dose independent rect. 13 12
37 245.62 wind 7.0 4320 < th dose independent rect. 18 1
44 245.74 wind 5.0 4320 > th dose dependent rect. 18 1
45 245.79 wind 5.0 4320 > th dose independent rect. 13 1
56 245.97 humidity 60.0 14400 < th dose independent rect. 6 1
58 245.97 humidity 60.0 14400 < th dose independent rect. 20 1
60 245.97 radiation 20.0 14400 > th dose independent rect. 17 1
111 245.97 humidity 60.0 14400 < th dose dependent rect. 6 1
113 245.97 humidity 60.0 14400 < th dose dependent rect. 20 1
115 245.97 radiation 20.0 14400 > th dose dependent rect. 17 1
166 245.98 wind 5.0 4320 < th dose independent rect. 13 12
192 246.37 wind 5.0 4320 > th dose independent rect. 18 3
211 246.69 wind 3.0 4320 > th dose dependent rect. 13 12
246 247.15 humidity 80.0 14400 > th dose independent rect. 18 6
260 247.30 radiation 1.0 4320 < th dose dependent rect. 3 1
285 247.53 humidity 80.0 14400 < th dose independent rect. 22 1
300 247.68 wind 5.0 4320 > th dose independent sin 17 NA
301 247.68 wind 1.0 30 > th dose independent rect. 2 1
302 247.69 radiation 1.0 1440 > th dose independent rect. 9 1
315 247.78 temperature 25.0 10 < th dose independent rect. 2 1
326 247.84 temperature 20.0 10 > th dose independent rect. 2 4
332 247.91 humidity 60.0 14400 > th dose independent rect. 20 12
334 247.92 wind 5.0 4320 < th dose independent sin 16 NA
343 247.96 temperature 20.0 90 > th dose independent rect. 2 1
358 248.05 temperature 30.0 10 < th dose dependent rect. 2 1
364 248.13 wind 3.0 10 < th dose independent rect. 2 1
386 248.30 humidity 60.0 14400 > th dose independent rect. 1 7
399 248.40 atmosphere 1015.0 10 < th dose dependent rect. 2 1
405 248.47 atmosphere 1000.0 10 > th dose independent rect. 2 1
409 248.50 wind 9.0 10 < th dose independent rect. 2 1
410 248.50 temperature 10.0 10 > th dose independent rect. 2 1
413 248.50 humidity 50.0 10 > th dose independent rect. 2 1
417 248.50 atmosphere 1010.0 10 < th dose independent rect. 2 1
419 248.50 radiation 1.0 10 < th dose independent rect. 2 1
424 248.50 precipitation 0.1 10 < th dose independent rect. 2 1
425 248.50 temperature 10.0 10 > th dose independent rect. 3 23
426 248.50 radiation 1.0 10 < th dose dependent rect. 2 1
431 248.50 precipitation 0.1 10 < th dose dependent rect. 2 1
433 248.51 radiation 1.0 1440 < th dose independent rect. 9 4
434 248.51 radiation 1.0 1440 < th dose dependent rect. 9 4
439 248.56 humidity 90.0 14400 < th dose dependent rect. 20 8
442 248.62 humidity 90.0 4320 < th dose independent rect. 6 1
450 248.68 atmosphere 995.0 10 > th dose dependent rect. 2 1
452 248.71 humidity 90.0 4320 > th dose independent rect. 6 1
460 248.76 atmosphere 995.0 10 > th dose independent rect. 3 23
475 248.86 temperature 20.0 90 > th dose independent rect. 1 5
507 248.93 radiation 10.0 43200 < th dose dependent rect. 3 1
512 248.98 humidity 50.0 10 > th dose dependent rect. 2 1
518 249.05 temperature 10.0 10 > th dose dependent rect. 2 1
523 249.07 precipitation 0.1 10 < th dose independent rect. 3 23
525 249.07 precipitation 0.1 10 < th dose dependent rect. 3 23
526 249.08 wind 3.0 4320 > th dose dependent sin 16 NA
546 249.17 humidity 90.0 14400 < th dose dependent rect. 22 10
570 249.27 wind 9.0 1440 < th dose independent rect. 3 1
571 249.27 temperature 10.0 1440 > th dose independent rect. 3 1
574 249.27 temperature 30.0 1440 < th dose independent rect. 3 1
578 249.27 humidity 50.0 1440 > th dose independent rect. 3 1
587 249.27 atmosphere 995.0 1440 > th dose independent rect. 3 1
588 249.27 radiation 1.0 1440 < th dose independent rect. 3 1
608 249.27 temperature 10.0 1440 > th dose independent rect. 4 23
633 249.33 humidity 80.0 14400 > th dose independent rect. 22 3
640 249.35 wind 9.0 30 < th dose dependent rect. 2 1
684 249.52 radiation 1.0 1440 < th dose independent rect. 11 2
685 249.52 radiation 1.0 1440 < th dose dependent rect. 11 2
687 249.53 humidity 60.0 14400 > th dose independent rect. 21 1
691 249.54 temperature 25.0 90 > th dose dependent rect. 1 3
713 249.67 temperature 20.0 270 > th dose independent rect. 23 4
727 249.75 wind 1.0 10 < th dose independent rect. 2 6
740 249.81 humidity 80.0 14400 > th dose independent rect. 18 13
746 249.86 radiation 1.0 1440 > th dose independent rect. 9 4
748 249.86 humidity 80.0 14400 < th dose independent rect. 18 6
773 250.00 radiation 1.0 1440 > th dose independent rect. 11 1
783 250.03 wind 1.0 10 < th dose independent rect. 2 4
793 250.07 radiation 30.0 14400 < th dose independent rect. 17 7
850 250.39 humidity 60.0 14400 > th dose independent rect. 20 4
870 250.55 humidity 80.0 14400 > th dose independent sin 12 NA
871 250.55 humidity 50.0 14400 > th dose dependent rect. 20 3
909 250.77 wind 9.0 4320 < th dose dependent rect. 18 3
940 250.93 wind 9.0 4320 < th dose dependent rect. 13 12
962 251.03 humidity 50.0 14400 > th dose dependent rect. 20 13
969 251.05 radiation 30.0 14400 < th dose independent rect. 17 5
989 251.15 humidity 70.0 14400 > th dose independent rect. 22 7