Os04g0519100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0519100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 294.36 | 0.806 | 5.03 | -1.09 | 1.09 | -2.96 | -0.199 | -0.567 | 0.503 | 13.9 | 13.94 | 523 | -- | -- |
| 294.27 | 0.799 | 5.02 | -0.998 | 1.15 | -2.97 | -0.192 | -- | 0.534 | 13.9 | 14.71 | 487 | -- | -- |
| 294.22 | 0.799 | 5.03 | -1.07 | 1.15 | -3 | -- | -0.43 | 0.502 | 13.8 | 14.25 | 486 | -- | -- |
| 294.37 | 0.799 | 5.02 | -1.01 | 1.17 | -2.96 | -- | -- | 0.527 | 13.8 | 14.7 | 477 | -- | -- |
| 331.81 | 0.848 | 5.03 | -0.975 | -- | -2.96 | -- | -0.361 | 0.538 | -- | 15.07 | 837 | -- | -- |
| 395.61 | 0.932 | 5.1 | -1.71 | 1.18 | -- | 0.463 | -- | 0.0808 | 11 | -- | -- | -- | -- |
| 396.46 | 0.932 | 5.1 | -1.69 | 1.17 | -- | -- | -- | 0.0832 | 11.1 | -- | -- | -- | -- |
| 331.79 | 0.848 | 5.02 | -0.893 | -- | -3.04 | -- | -- | 0.556 | -- | 14.9 | 830 | -- | -- |
| 318.71 | 0.831 | 4.98 | -- | 1.15 | -3.32 | -- | -- | 0.719 | 14 | 14.69 | 514 | -- | -- |
| 482.43 | 1.03 | 5.13 | -1.71 | -- | -- | -- | -- | 0.0736 | -- | -- | -- | -- | -- |
| 471.31 | 1.02 | 5.06 | -- | 1.19 | -- | -- | -- | 0.271 | 11.2 | -- | -- | -- | -- |
| 350.48 | 0.872 | 4.98 | -- | -- | -3.43 | -- | -- | 0.702 | -- | 10.83 | 853 | -- | -- |
| 559.78 | 1.1 | 5.08 | -- | -- | -- | -- | -- | 0.264 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 281.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 7 | 283.90 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 17 | 285.63 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 25 | 287.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 36 | 288.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 43 | 289.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 49 | 289.57 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 57 | 290.29 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 14 |
| 84 | 292.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 172 | 295.01 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 188 | 295.57 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 9 |
| 234 | 297.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 22 |
| 247 | 297.51 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 258 | 297.80 | temperature | 25 | 4320 | < th | dose independent | sin | 7 | NA |
| 268 | 297.97 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 18 |
| 283 | 298.26 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 12 |
| 330 | 299.02 | temperature | 25 | 4320 | < th | dose independent | rect. | 13 | 20 |
| 340 | 299.19 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 2 |
| 344 | 299.23 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 357 | 299.47 | temperature | 25 | 4320 | > th | dose independent | sin | 7 | NA |
| 371 | 299.60 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 18 |
| 391 | 299.77 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 397 | 299.84 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 400 | 299.86 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 12 |
| 414 | 300.03 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 416 | 300.04 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 426 | 300.12 | temperature | 30 | 4320 | < th | dose dependent | rect. | 22 | 6 |
| 438 | 300.22 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 7 |
| 448 | 300.33 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 13 |
| 452 | 300.34 | temperature | 30 | 4320 | < th | dose dependent | rect. | 22 | 3 |
| 455 | 300.36 | temperature | 25 | 4320 | > th | dose independent | rect. | 13 | 20 |
| 466 | 300.44 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 12 |
| 468 | 300.45 | temperature | 10 | 4320 | > th | dose dependent | rect. | 22 | 3 |
| 580 | 300.87 | temperature | 10 | 4320 | > th | dose dependent | sin | 9 | NA |
| 588 | 300.91 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 618 | 301.01 | temperature | 25 | 4320 | > th | dose dependent | sin | 8 | NA |
| 660 | 301.15 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 8 |
| 697 | 301.27 | temperature | 30 | 4320 | < th | dose dependent | sin | 10 | NA |
| 763 | 301.45 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 858 | 301.67 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 3 |