Os04g0518600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os04g0518600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 230.42 | 0.713 | 3.36 | -2.06 | 0.507 | 1.15 | -0.998 | -5.42 | -0.207 | 11.5 | 25.59 | 1346 | -- | -- |
| 239.2 | 0.72 | 3.24 | -0.626 | 0.451 | 0.644 | -0.919 | -- | -0.0683 | 11.5 | 26.51 | 8447 | -- | -- |
| 234.52 | 0.713 | 3.36 | -2.12 | 0.512 | 1.17 | -- | -5.52 | -0.184 | 11.4 | 26.05 | 1351 | -- | -- |
| 242.14 | 0.725 | 3.22 | -0.689 | 0.487 | 0.627 | -- | -- | -0.0426 | 11.4 | 26.41 | 8433 | -- | -- |
| 249.67 | 0.736 | 3.36 | -2.05 | -- | 1.04 | -- | -5.02 | -0.175 | -- | 25.9 | 1426 | -- | -- |
| 254.68 | 0.748 | 3.17 | -0.419 | 0.438 | -- | -0.937 | -- | 0.192 | 11.2 | -- | -- | -- | -- |
| 258.43 | 0.753 | 3.17 | -0.458 | 0.443 | -- | -- | -- | 0.189 | 11.2 | -- | -- | -- | -- |
| 255.77 | 0.745 | 3.2 | -0.618 | -- | 0.507 | -- | -- | 0.0969 | -- | 28.66 | 7146 | -- | -- |
| 252.6 | 0.74 | 3.19 | -- | 0.485 | 0.489 | -- | -- | 0.103 | 11.5 | 29.27 | 8449 | -- | -- |
| 270.66 | 0.769 | 3.18 | -0.468 | -- | -- | -- | -- | 0.185 | -- | -- | -- | -- | -- |
| 263.96 | 0.76 | 3.16 | -- | 0.447 | -- | -- | -- | 0.24 | 11.2 | -- | -- | -- | -- |
| 264.44 | 0.757 | 3.18 | -- | -- | 0.434 | -- | -- | 0.232 | -- | 33 | 7022 | -- | -- |
| 276.45 | 0.776 | 3.17 | -- | -- | -- | -- | -- | 0.237 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 224.35 | wind | 1 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 2 | 228.56 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 18 |
| 3 | 228.78 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 4 | 228.84 | wind | 1 | 720 | < th | dose independent | rect. | 4 | 1 |
| 5 | 228.86 | temperature | 25 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 8 | 228.99 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 9 | 229.08 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 17 | 229.29 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 18 | 229.29 | temperature | 20 | 30 | > th | dose dependent | rect. | 2 | 19 |
| 20 | 229.33 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 21 |
| 29 | 229.46 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 34 | 229.54 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 64 | 229.82 | temperature | 25 | 1440 | > th | dose dependent | sin | 14 | NA |
| 69 | 229.85 | radiation | 1 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 98 | 230.24 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 122 | 230.58 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 7 |
| 139 | 230.74 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 13 |
| 140 | 230.75 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 10 |
| 154 | 230.95 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 155 | 230.96 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 158 | 230.98 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 20 |
| 160 | 231.04 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 170 | 231.19 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 16 |
| 171 | 231.21 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 15 |
| 173 | 231.22 | radiation | 1 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 186 | 231.23 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 188 | 231.23 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 17 |
| 189 | 231.24 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 195 | 231.27 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 197 | 231.27 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 198 | 231.27 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 21 |
| 211 | 231.31 | radiation | 20 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 246 | 231.38 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 6 |
| 250 | 231.39 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 253 | 231.39 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 254 | 231.40 | wind | 3 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 266 | 231.43 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 270 | 231.44 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 282 | 231.48 | humidity | 80 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 291 | 231.51 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 294 | 231.52 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 324 | 231.58 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 332 | 231.61 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 12 |
| 338 | 231.62 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 351 | 231.68 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 20 |
| 352 | 231.69 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 9 |
| 379 | 231.78 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 18 |
| 395 | 231.86 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 14 |
| 426 | 231.97 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 429 | 231.98 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 19 |
| 468 | 232.07 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 17 |
| 471 | 232.08 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 15 |
| 473 | 232.09 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 480 | 232.10 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 17 |
| 483 | 232.11 | wind | 5 | 43200 | > th | dose dependent | sin | 19 | NA |
| 521 | 232.20 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 554 | 232.26 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 12 |
| 556 | 232.26 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 573 | 232.30 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 14 |
| 587 | 232.32 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 613 | 232.37 | wind | 7 | 43200 | < th | dose independent | sin | 22 | NA |
| 630 | 232.40 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 664 | 232.46 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 669 | 232.47 | wind | 7 | 43200 | > th | dose independent | sin | 22 | NA |
| 688 | 232.50 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 20 |
| 700 | 232.52 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 727 | 232.58 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 16 |
| 732 | 232.59 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 20 |
| 746 | 232.61 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 772 | 232.66 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 14 |
| 812 | 232.72 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 819 | 232.73 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 17 |
| 865 | 232.81 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 14 |
| 946 | 232.93 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 20 |
| 990 | 232.98 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 4 |