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Os04g0517500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Phosphoenolpyruvate carboxylase kinase 4.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.8 (0.0436) R2 : 0.891
β1 : -0.152 (0.159) R2dD : 0.000179 R2D : -0.00204
β2 : 1.43 (0.225) R2dC : 0.0419 R2C : 0.295
β3 : -4.08 (0.177) R2dE : 0.536 R2E : 0.786
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -4.76 (0.343) R2dD*E : 0.0471 R2D*E : 0.0351
γ1 : 0.747 (0.0923) R2dN8 : 0.0199 R2N8 : 0.0142
σ : 0.808
deviance : 301.16
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C
peak time of C : 20.4
E
wheather : precipitation
threshold : 0.2827
memory length : 239
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.15
open length of G : 9.85

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
289.92 0.8 12.8 -0.187 1.38 -4.12 -4.13 -7.5 0.748 20.3 0.0832 242 3.08 9.93
320.15 0.833 12.7 -0.213 0.939 -5.91 -4.5 -- 0.835 12.1 0.02409 271 2.62 10.4
301.16 0.808 12.8 -0.152 1.43 -4.08 -- -4.76 0.747 20.4 0.2827 239 3.15 9.85
430.37 0.966 12.8 -0.27 1.45 -4 -- -- 0.696 20.6 0.471 236 3.15 9.85
320.66 0.834 12.8 -0.121 -- -5.01 -- -4.48 0.732 -- 0.9676 243 2.79 10.2
408.99 0.948 13 0.000123 6.1 -- 5.43 -- 0.703 21.8 -- -- -- --
521.06 1.07 13 -0.202 6.09 -- -- -- 0.697 21.7 -- -- -- --
442.61 0.98 12.8 -0.273 -- -5.02 -- -- 0.695 -- 0.4998 237 2.76 10.2
432.03 0.968 12.8 -- 1.55 -3.91 -- -- 0.734 20.7 0.2375 233 3.17 9.86
2725.88 2.44 12.8 -0.145 -- -- -- -- 0.689 -- -- -- -- --
522.14 1.07 13 -- 6.09 -- -- -- 0.719 21.7 -- -- -- --
444.57 0.982 12.8 -- -- -5.02 -- -- 0.724 -- 0.4664 236 2.76 10.2
2726.43 2.44 12.8 -- -- -- -- -- 0.705 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 296.69 precipitation 0.1 270 < th dose independent rect. 3 10
2 296.69 precipitation 0.1 270 < th dose dependent rect. 3 10
3 303.01 wind 9.0 270 < th dose independent rect. 13 14
4 304.13 temperature 10.0 270 > th dose independent rect. 3 10
5 304.13 atmosphere 995.0 270 > th dose independent rect. 3 10
6 304.13 atmosphere 1015.0 270 < th dose independent rect. 3 10
7 304.13 temperature 10.0 270 > th dose independent rect. 13 14
8 304.29 temperature 15.0 270 > th dose dependent rect. 22 6
12 306.21 wind 9.0 270 < th dose independent rect. 3 10
16 308.44 temperature 15.0 270 > th dose dependent rect. 23 4
20 311.52 radiation 1.0 30 > th dose independent rect. 5 9
33 313.10 radiation 10.0 30 < th dose dependent sin 5 NA
35 313.44 precipitation 0.1 270 < th dose independent rect. 13 14
36 313.44 precipitation 0.1 270 < th dose dependent rect. 13 14
38 313.90 radiation 10.0 10 < th dose dependent rect. 24 17
53 314.46 humidity 50.0 270 > th dose independent rect. 3 10
101 319.94 radiation 40.0 90 < th dose independent rect. 13 16
102 319.97 temperature 10.0 10 > th dose dependent rect. 14 15
117 320.19 temperature 10.0 10 > th dose dependent rect. 5 9
144 322.39 radiation 1.0 30 < th dose independent sin 4 NA
166 323.87 radiation 1.0 270 < th dose independent rect. 22 14
183 324.58 radiation 1.0 30 > th dose independent sin 3 NA
197 325.39 radiation 1.0 270 < th dose dependent rect. 22 14
213 326.03 radiation 10.0 10 < th dose dependent rect. 24 12
253 327.26 temperature 20.0 270 > th dose independent rect. 23 5
264 327.66 atmosphere 995.0 270 > th dose independent rect. 13 14
268 327.75 humidity 90.0 10 < th dose independent rect. 5 9
281 328.15 wind 5.0 270 < th dose independent rect. 23 4
295 328.64 wind 9.0 270 < th dose dependent rect. 23 4
298 328.88 radiation 1.0 90 < th dose independent rect. 1 15
303 328.99 wind 5.0 270 < th dose independent rect. 22 7
304 329.00 humidity 80.0 10 > th dose dependent rect. 24 16
319 329.23 radiation 1.0 90 < th dose independent rect. 1 10
324 329.26 radiation 1.0 90 < th dose independent rect. 1 7
433 330.70 temperature 15.0 10 > th dose dependent rect. 24 5
447 330.94 temperature 20.0 10 > th dose independent rect. 24 5
473 331.38 radiation 40.0 270 < th dose dependent rect. 16 7
482 331.59 humidity 80.0 10 > th dose dependent rect. 24 14
504 331.85 wind 9.0 270 < th dose independent rect. 23 17
505 331.93 radiation 20.0 270 < th dose independent rect. 16 7
534 332.36 atmosphere 995.0 270 > th dose independent rect. 23 17
537 332.40 temperature 15.0 270 > th dose independent rect. 5 17
551 332.51 temperature 10.0 270 > th dose independent rect. 22 7
553 332.51 temperature 30.0 270 < th dose independent rect. 22 7
554 332.51 humidity 50.0 270 > th dose independent rect. 22 7
557 332.51 atmosphere 995.0 270 > th dose independent rect. 22 7
563 332.54 humidity 80.0 270 > th dose independent rect. 23 5
572 332.81 temperature 15.0 270 > th dose independent rect. 23 17
577 332.86 atmosphere 1015.0 270 < th dose independent rect. 23 17
584 332.96 temperature 10.0 270 > th dose independent rect. 16 7
588 333.05 wind 9.0 270 < th dose independent rect. 16 7
590 333.08 precipitation 0.1 10 < th dose independent rect. 5 9
591 333.08 precipitation 0.1 10 < th dose dependent rect. 5 9
612 333.36 temperature 15.0 270 > th dose independent rect. 4 19
623 333.60 temperature 10.0 270 > th dose independent rect. 23 5
624 333.60 temperature 30.0 270 < th dose independent rect. 23 5
625 333.60 humidity 50.0 270 > th dose independent rect. 23 5
628 333.60 atmosphere 995.0 270 > th dose independent rect. 23 5
629 333.60 radiation 1.0 270 < th dose independent rect. 23 5
635 333.60 radiation 1.0 270 < th dose dependent rect. 23 5
657 333.81 humidity 50.0 270 > th dose dependent rect. 23 5
675 333.97 radiation 40.0 10 < th dose independent rect. 14 15
678 334.02 atmosphere 1015.0 270 < th dose independent rect. 23 5
698 334.13 wind 9.0 270 < th dose independent rect. 5 17
699 334.15 atmosphere 1015.0 270 < th dose independent rect. 22 7
726 334.56 radiation 10.0 10 < th dose dependent rect. 24 6
745 334.87 wind 9.0 270 < th dose independent rect. 4 19
746 334.88 precipitation 0.1 270 < th dose independent rect. 5 17
748 334.88 precipitation 0.1 270 < th dose dependent rect. 5 17
870 335.65 precipitation 0.1 270 < th dose independent rect. 3 20
873 335.65 precipitation 0.1 270 < th dose dependent rect. 3 20
899 335.87 precipitation 0.1 270 < th dose independent rect. 23 4
900 335.87 precipitation 0.1 270 < th dose dependent rect. 23 4
904 335.91 humidity 70.0 10 > th dose dependent rect. 24 10