Os04g0517100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Y19 protein.
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Os04g0517100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Y19 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 313.27 | 0.832 | 8.45 | -0.623 | 1.06 | -1.32 | 1.39 | -3.29 | 0.105 | 1.81 | 26.2 | 5312 | -- | -- |
| 321.82 | 0.836 | 8.35 | 0.0689 | 1.1 | -1.46 | 1.25 | -- | 0.229 | 2.05 | 26.2 | 5435 | -- | -- |
| 320.6 | 0.84 | 8.37 | -0.596 | 0.216 | -0.877 | -- | -1.99 | 0.23 | 23 | 26.2 | 5312 | -- | -- |
| 326.02 | 0.841 | 8.33 | 0.237 | 1.04 | -1.51 | -- | -- | 0.365 | 1.92 | 26.2 | 5432 | -- | -- |
| 323.06 | 0.842 | 8.36 | -0.575 | -- | -0.942 | -- | -1.98 | 0.251 | -- | 26.2 | 5312 | -- | -- |
| 382.67 | 0.917 | 8.39 | -0.339 | 0.927 | -- | 1.14 | -- | 0.0682 | 2.08 | -- | -- | -- | -- |
| 387.62 | 0.922 | 8.39 | -0.372 | 0.929 | -- | -- | -- | 0.0615 | 2.09 | -- | -- | -- | -- |
| 335.81 | 0.857 | 8.31 | -0.106 | -- | -1.01 | -- | -- | 0.396 | -- | 26.2 | 6070 | -- | -- |
| 326.17 | 0.841 | 8.33 | -- | 0.947 | -1.39 | -- | -- | 0.368 | 1.92 | 26.27 | 6059 | -- | -- |
| 439.36 | 0.979 | 8.38 | -0.334 | -- | -- | -- | -- | 0.0835 | -- | -- | -- | -- | -- |
| 391.27 | 0.925 | 8.38 | -- | 0.922 | -- | -- | -- | 0.103 | 2.08 | -- | -- | -- | -- |
| 336.1 | 0.857 | 8.31 | -- | -- | -1.02 | -- | -- | 0.409 | -- | 26.2 | 6070 | -- | -- |
| 442.29 | 0.982 | 8.37 | -- | -- | -- | -- | -- | 0.121 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 309.11 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 2 | 309.58 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 3 | 309.78 | temperature | 25 | 270 | > th | dose dependent | sin | 9 | NA |
| 4 | 309.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 5 | 309.91 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 10 | 310.46 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 18 |
| 14 | 310.86 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 24 | 311.90 | temperature | 25 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 60 | 312.82 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 3 |
| 83 | 313.45 | temperature | 10 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 90 | 313.64 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 5 |
| 109 | 313.91 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 15 |
| 159 | 314.32 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 237 | 314.80 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 9 |
| 253 | 314.90 | temperature | 25 | 14400 | < th | dose dependent | sin | 10 | NA |
| 262 | 314.95 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 268 | 314.97 | temperature | 25 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 277 | 315.04 | temperature | 20 | 14400 | < th | dose independent | rect. | 1 | 3 |
| 282 | 315.06 | temperature | 20 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 306 | 315.14 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 21 |
| 325 | 315.28 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 2 |
| 377 | 315.57 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 392 | 315.64 | temperature | 25 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 469 | 315.88 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 475 | 315.91 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 505 | 316.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 597 | 316.34 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 603 | 316.36 | temperature | 10 | 14400 | > th | dose dependent | sin | 10 | NA |
| 615 | 316.39 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 701 | 316.69 | temperature | 25 | 4320 | > th | dose independent | sin | 8 | NA |
| 748 | 316.81 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 869 | 317.19 | temperature | 25 | 4320 | < th | dose independent | sin | 7 | NA |
| 898 | 317.26 | temperature | 20 | 14400 | < th | dose independent | rect. | 23 | 17 |
| 926 | 317.32 | temperature | 20 | 14400 | > th | dose independent | rect. | 22 | 18 |
| 927 | 317.32 | temperature | 25 | 270 | > th | dose independent | rect. | 16 | 22 |