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Os04g0517000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.14 (0.0601) R2 : 0.395
β1 : -1.13 (0.32) R2dD : 0.0485 R2D : -0.177
β2 : 1.27 (0.154) R2dC : 0.12 R2C : 0.0908
β3 : 0.7 (0.235) R2dE : 0.02 R2E : -0.0467
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -12.5 (1.13) R2dD*E : 0.452 R2D*E : 0.266
γ1 : -0.0649 (0.138) R2dN8 : 0.000565 R2N8 : -0.0162
σ : 0.972
deviance : 435.92
__
_____
C
peak time of C : 7.42
E
wheather : temperature
threshold : 20.55
memory length : 665
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
435.79 0.981 8.14 -1.09 1.27 0.689 0.27 -12.3 -0.051 7.44 20.49 671 -- --
506.82 1.05 7.89 0.902 1.13 0.94 3.04 -- 0.374 8.06 7.435 18243 -- --
435.92 0.972 8.14 -1.13 1.27 0.7 -- -12.5 -0.0649 7.42 20.55 665 -- --
535.46 1.08 7.92 0.782 1.19 1.08 -- -- 0.306 7.51 7.742 13308 -- --
496.95 1.04 8.1 -0.489 -- -0.487 -- -11.3 0.237 -- 18.9 591 -- --
525.36 1.07 7.83 1.51 1.17 -- 3.26 -- 0.699 7.69 -- -- -- --
554.85 1.1 7.83 1.59 1.18 -- -- -- 0.692 7.33 -- -- -- --
573.92 1.12 7.85 1.81 -- -1.43 -- -- 0.72 -- 26.69 510 -- --
541.07 1.08 7.98 -- 1.2 1.64 -- -- 0.017 7.47 7.687 18201 -- --
629.36 1.17 7.86 1.61 -- -- -- -- 0.712 -- -- -- -- --
621.27 1.17 7.87 -- 1.2 -- -- -- 0.515 7.24 -- -- -- --
616.06 1.16 8.02 -- -- 1.63 -- -- 0.00896 -- 9.641 17287 -- --
697.53 1.23 7.9 -- -- -- -- -- 0.534 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 421.94 wind 1.0 14400 < th dose independent rect. 20 5
2 425.58 humidity 60.0 43200 < th dose independent rect. 9 2
5 426.21 humidity 60.0 43200 > th dose independent rect. 9 2
7 426.73 precipitation 0.1 14400 > th dose dependent rect. 16 2
11 428.72 wind 1.0 14400 > th dose independent rect. 20 5
12 429.26 wind 1.0 14400 < th dose independent rect. 20 2
15 431.25 radiation 1.0 14400 < th dose dependent rect. 7 3
19 431.50 precipitation 0.1 14400 > th dose dependent rect. 2 6
24 432.15 humidity 90.0 14400 > th dose independent rect. 3 4
27 432.28 radiation 1.0 4320 < th dose dependent rect. 4 1
29 432.51 wind 1.0 14400 < th dose dependent rect. 20 2
30 432.81 wind 5.0 14400 > th dose dependent rect. 14 1
31 432.98 precipitation 0.1 43200 > th dose independent rect. 15 1
33 433.15 wind 1.0 14400 > th dose independent rect. 20 2
36 433.79 radiation 1.0 4320 < th dose dependent rect. 2 3
39 434.13 precipitation 0.1 43200 < th dose independent rect. 15 1
40 434.13 precipitation 0.1 43200 < th dose dependent rect. 15 1
45 434.70 temperature 20.0 720 > th dose dependent rect. 14 22
46 434.73 precipitation 0.1 14400 > th dose independent rect. 2 6
47 434.76 precipitation 0.1 14400 < th dose independent rect. 2 6
48 434.76 precipitation 0.1 14400 < th dose dependent rect. 2 6
51 434.79 humidity 90.0 14400 > th dose independent rect. 5 1
53 434.95 precipitation 0.1 43200 < th dose independent rect. 14 3
54 434.95 precipitation 0.1 43200 < th dose dependent rect. 14 3
56 435.01 precipitation 0.1 43200 > th dose independent rect. 14 3
59 435.07 precipitation 0.1 43200 < th dose independent rect. 11 6
60 435.07 precipitation 0.1 43200 < th dose dependent rect. 11 6
63 435.20 precipitation 0.1 43200 > th dose independent rect. 11 6
66 435.47 temperature 20.0 720 > th dose dependent rect. 17 22
69 435.55 humidity 50.0 43200 < th dose independent rect. 16 1
72 435.64 temperature 20.0 720 > th dose dependent rect. 19 23
78 435.86 humidity 90.0 14400 > th dose dependent rect. 1 2
79 435.87 humidity 80.0 1440 < th dose independent rect. 11 1
80 435.96 wind 7.0 14400 > th dose independent rect. 14 1
84 436.02 humidity 80.0 1440 > th dose independent rect. 11 1
92 436.36 radiation 1.0 14400 < th dose independent rect. 7 2
98 436.51 temperature 10.0 270 > th dose dependent rect. 14 23
99 436.59 radiation 1.0 14400 > th dose independent rect. 7 2
100 436.63 wind 1.0 14400 < th dose dependent rect. 20 5
104 436.89 precipitation 0.1 14400 > th dose dependent rect. 5 2
106 436.98 wind 7.0 14400 < th dose independent rect. 14 1
110 437.04 radiation 1.0 14400 < th dose dependent rect. 19 10
111 437.10 wind 5.0 43200 > th dose independent rect. 23 1
115 437.13 temperature 20.0 720 > th dose dependent no NA NA
120 437.39 humidity 90.0 14400 > th dose dependent rect. 1 5
123 437.50 humidity 50.0 43200 > th dose independent rect. 16 1
126 437.58 precipitation 0.1 43200 > th dose dependent rect. 14 3
127 437.65 temperature 20.0 720 > th dose dependent rect. 8 23
128 437.66 humidity 50.0 43200 < th dose independent rect. 16 3
131 437.74 radiation 20.0 43200 > th dose dependent rect. 17 14
135 437.97 humidity 50.0 43200 > th dose independent rect. 16 3
137 437.98 temperature 20.0 1440 > th dose dependent rect. 21 1
138 437.98 temperature 20.0 720 > th dose dependent rect. 3 23
141 438.09 wind 1.0 14400 < th dose dependent rect. 18 7
143 438.13 temperature 20.0 720 > th dose dependent rect. 11 23
146 438.17 radiation 20.0 43200 > th dose dependent rect. 6 1
166 438.36 temperature 20.0 720 > th dose dependent rect. 6 23
171 438.58 wind 5.0 43200 < th dose independent rect. 23 1
172 438.58 radiation 1.0 4320 > th dose independent rect. 4 1
182 438.58 radiation 1.0 4320 > th dose dependent rect. 4 1
194 438.59 precipitation 0.1 43200 < th dose independent rect. 23 1
195 438.59 precipitation 0.1 14400 > th dose independent rect. 5 2
196 438.59 precipitation 0.1 43200 < th dose dependent rect. 23 1
212 438.92 precipitation 0.1 43200 > th dose dependent rect. 19 1
213 438.95 precipitation 0.1 43200 > th dose independent rect. 23 1
214 438.95 precipitation 0.1 43200 > th dose dependent rect. 23 1
216 438.98 precipitation 0.1 43200 > th dose dependent rect. 11 6
220 439.08 radiation 1.0 14400 < th dose independent rect. 7 5
238 439.44 radiation 1.0 14400 > th dose independent rect. 7 5
245 439.55 radiation 1.0 4320 < th dose dependent rect. 16 1
248 439.60 wind 1.0 43200 < th dose independent rect. 5 1
251 439.67 humidity 50.0 43200 > th dose independent rect. 16 11
270 439.91 temperature 30.0 270 < th dose dependent rect. 23 22
276 440.01 radiation 1.0 14400 < th dose dependent rect. 23 6
281 440.08 radiation 30.0 43200 < th dose independent rect. 16 5
282 440.08 temperature 30.0 270 < th dose dependent rect. 1 22
288 440.21 precipitation 0.1 14400 < th dose independent rect. 5 2
289 440.21 precipitation 0.1 14400 < th dose dependent rect. 5 2
308 440.43 radiation 30.0 43200 < th dose independent rect. 16 15
310 440.45 humidity 90.0 14400 < th dose dependent rect. 3 1
313 440.51 temperature 20.0 1440 > th dose dependent rect. 17 6
324 440.67 radiation 10.0 14400 < th dose independent rect. 12 3
325 440.69 temperature 25.0 10 < th dose dependent sin 19 NA
343 440.94 atmosphere 1005.0 43200 < th dose independent rect. 10 1
344 440.94 radiation 30.0 43200 < th dose independent rect. 16 11
370 441.42 humidity 80.0 14400 > th dose independent rect. 13 1
373 441.42 radiation 30.0 4320 < th dose independent rect. 16 15
389 441.60 radiation 10.0 4320 < th dose independent rect. 2 4
399 441.70 radiation 10.0 4320 < th dose independent rect. 4 2
400 441.70 radiation 10.0 4320 < th dose independent rect. 21 10
429 441.96 wind 5.0 14400 < th dose independent rect. 16 1
437 442.03 atmosphere 1000.0 43200 < th dose dependent rect. 3 1
444 442.11 atmosphere 1010.0 14400 < th dose independent rect. 22 4
449 442.18 atmosphere 1010.0 14400 < th dose independent rect. 23 2
451 442.19 humidity 60.0 43200 < th dose dependent rect. 18 1
461 442.28 atmosphere 1010.0 14400 > th dose independent rect. 22 4
499 442.39 precipitation 0.1 43200 < th dose independent rect. 18 1
500 442.39 precipitation 0.1 43200 < th dose dependent rect. 18 1
505 442.43 precipitation 0.1 43200 > th dose independent rect. 18 1
537 442.71 radiation 10.0 43200 < th dose independent rect. 18 3
538 442.72 atmosphere 1005.0 43200 > th dose independent rect. 10 1
541 442.74 radiation 1.0 4320 < th dose dependent rect. 18 3
547 442.77 radiation 1.0 4320 < th dose dependent rect. 16 14
569 442.89 temperature 25.0 1440 < th dose independent rect. 8 19
570 442.89 temperature 25.0 1440 < th dose independent rect. 16 22
571 442.90 humidity 80.0 14400 > th dose independent rect. 15 1
590 443.02 wind 5.0 14400 > th dose independent rect. 16 1
593 443.03 atmosphere 1010.0 14400 < th dose independent rect. 1 1
622 443.21 atmosphere 995.0 43200 < th dose independent rect. 15 11
633 443.34 humidity 80.0 14400 > th dose independent rect. 13 3
635 443.34 atmosphere 995.0 43200 > th dose independent rect. 15 11
662 443.48 radiation 10.0 43200 < th dose independent rect. 18 9
664 443.49 humidity 50.0 43200 < th dose independent rect. 14 1
678 443.57 radiation 10.0 43200 < th dose independent rect. 18 11
716 443.78 temperature 25.0 1440 < th dose dependent rect. 21 1
728 443.83 humidity 50.0 43200 < th dose independent rect. 16 18
764 444.03 humidity 50.0 43200 > th dose independent rect. 16 18
772 444.06 atmosphere 1010.0 4320 > th dose independent rect. 10 1
796 444.16 humidity 50.0 43200 > th dose independent rect. 14 1
801 444.20 atmosphere 995.0 43200 > th dose independent rect. 16 7
809 444.24 atmosphere 1005.0 43200 < th dose independent rect. 1 10
856 444.36 wind 9.0 43200 > th dose dependent rect. 18 2
858 444.38 precipitation 0.1 43200 < th dose independent rect. 11 11
859 444.38 precipitation 0.1 43200 < th dose dependent rect. 11 11
899 444.53 radiation 1.0 4320 > th dose independent rect. 18 1
909 444.53 precipitation 0.1 43200 > th dose independent rect. 11 11
921 444.61 atmosphere 995.0 43200 > th dose independent rect. 17 5
925 444.62 wind 1.0 14400 > th dose independent rect. 23 1
936 444.68 atmosphere 995.0 43200 < th dose independent rect. 16 7
968 444.83 atmosphere 995.0 43200 > th dose independent rect. 14 16
971 444.84 atmosphere 1010.0 4320 < th dose independent rect. 10 1