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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0516800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.75 (0.0409) R2 : 0.35
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.23 (0.106) R2dC : 0.198 R2C : 0.205
β3 : -1.88 (0.209) R2dE : 0.132 R2E : 0.147
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0925 (0.0903) R2dN8 : 0.00228 R2N8 : 0.012
σ : 0.756
deviance : 263.5
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_____
C
peak time of C : 5.95
E
wheather : radiation
threshold : 1.937
memory length : 2912
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
247.63 0.739 3.68 0.716 1.21 -1.52 2.39 -2.03 0.259 6.04 1.756 4357 -- --
247.63 0.733 3.69 0.368 1.23 -1.65 2.55 -- 0.248 5.98 1.817 2923 -- --
261.46 0.753 3.68 0.753 1.22 -1.49 -- -2.02 0.248 6.2 1.85 4339 -- --
260.96 0.752 3.7 0.375 1.23 -1.69 -- -- 0.192 6.01 2.021 2912 -- --
338.89 0.857 3.7 0.837 -- -1.54 -- -2.22 0.272 -- 1.933 4340 -- --
282.81 0.788 3.66 0.664 1.24 -- 2.45 -- 0.46 6.19 -- -- -- --
297.56 0.808 3.66 0.69 1.25 -- -- -- 0.452 6.23 -- -- -- --
339.51 0.858 3.76 0.38 -- -1.76 -- -- 0.15 -- 2.268 2901 -- --
263.5 0.756 3.75 -- 1.23 -1.88 -- -- 0.0925 5.95 1.937 2912 -- --
378.73 0.909 3.69 0.725 -- -- -- -- 0.479 -- -- -- -- --
310.12 0.824 3.68 -- 1.26 -- -- -- 0.375 6.2 -- -- -- --
343.19 0.863 3.77 -- -- -1.91 -- -- 0.102 -- 2.053 2901 -- --
392.58 0.925 3.71 -- -- -- -- -- 0.399 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 240.92 radiation 1.0 4320 > th dose independent rect. 18 14
4 241.87 radiation 1.0 4320 < th dose independent rect. 18 14
5 241.88 radiation 1.0 4320 > th dose independent rect. 18 1
17 242.55 radiation 1.0 4320 > th dose independent rect. 18 23
21 243.06 radiation 1.0 4320 < th dose independent rect. 18 11
22 243.06 radiation 1.0 4320 > th dose independent rect. 18 18
24 243.07 radiation 1.0 4320 < th dose independent rect. 18 23
26 243.12 radiation 1.0 4320 < th dose independent rect. 18 6
29 243.17 radiation 1.0 4320 < th dose independent rect. 18 2
39 243.73 radiation 1.0 4320 < th dose independent rect. 18 18
58 244.70 radiation 1.0 4320 < th dose dependent rect. 18 14
59 244.77 radiation 1.0 4320 < th dose dependent rect. 18 23
71 245.08 precipitation 0.1 43200 > th dose independent rect. 19 1
73 245.31 precipitation 0.1 43200 < th dose independent rect. 19 1
74 245.31 precipitation 0.1 43200 < th dose dependent rect. 19 1
77 245.37 radiation 1.0 4320 < th dose dependent rect. 2 6
81 245.42 radiation 1.0 1440 < th dose dependent rect. 18 10
86 245.54 radiation 1.0 4320 < th dose dependent rect. 21 11
93 245.62 radiation 1.0 1440 < th dose dependent rect. 18 2
94 245.63 radiation 1.0 1440 < th dose dependent rect. 18 6
97 245.70 precipitation 0.1 43200 > th dose dependent rect. 19 1
98 245.77 radiation 1.0 4320 > th dose independent sin 10 NA
104 245.87 radiation 1.0 4320 > th dose independent rect. 5 3
110 245.93 radiation 1.0 4320 < th dose independent sin 10 NA
111 245.94 radiation 1.0 4320 < th dose independent rect. 5 3
125 246.17 radiation 20.0 4320 < th dose dependent rect. 18 11
133 246.24 radiation 1.0 4320 > th dose independent rect. 5 12
141 246.31 wind 3.0 43200 < th dose dependent rect. 2 2
167 246.43 radiation 1.0 4320 < th dose independent rect. 5 12
179 246.50 radiation 1.0 4320 < th dose independent rect. 22 19
183 246.52 radiation 1.0 4320 < th dose independent rect. 2 15
196 246.61 radiation 1.0 4320 < th dose independent rect. 21 11
199 246.63 radiation 1.0 4320 < th dose independent rect. 2 6
202 246.63 radiation 1.0 4320 > th dose independent rect. 16 16
226 246.75 radiation 1.0 4320 < th dose dependent sin 8 NA
229 246.76 radiation 1.0 4320 < th dose dependent rect. 2 15
240 246.89 radiation 1.0 4320 < th dose dependent rect. 21 20
249 246.96 humidity 90.0 43200 < th dose independent rect. 19 1
250 246.97 radiation 1.0 4320 < th dose independent rect. 16 16
289 247.27 humidity 80.0 43200 > th dose independent rect. 13 1
333 247.44 humidity 80.0 43200 < th dose independent rect. 13 1
338 247.47 radiation 1.0 4320 > th dose independent rect. 16 20
364 247.68 radiation 1.0 4320 < th dose independent rect. 16 20
390 247.93 radiation 1.0 4320 < th dose independent sin 4 NA
395 247.95 radiation 1.0 4320 > th dose independent sin 4 NA
401 247.96 humidity 90.0 43200 > th dose independent rect. 20 1
462 248.15 radiation 1.0 4320 > th dose independent rect. 5 9
472 248.20 radiation 1.0 4320 < th dose independent rect. 5 8
481 248.24 humidity 80.0 43200 > th dose dependent rect. 10 1
541 248.45 radiation 1.0 4320 > th dose independent no NA NA
594 248.49 radiation 1.0 4320 < th dose independent rect. 21 17
599 248.50 atmosphere 1005.0 14400 > th dose independent rect. 16 1
606 248.51 radiation 1.0 4320 < th dose independent rect. 2 12
615 248.52 radiation 1.0 4320 < th dose independent rect. 5 23
630 248.53 radiation 1.0 4320 < th dose independent rect. 5 19
641 248.55 radiation 1.0 4320 < th dose independent rect. 5 15
649 248.56 radiation 1.0 4320 < th dose dependent rect. 16 16
651 248.57 radiation 1.0 4320 < th dose independent rect. 2 22
652 248.57 radiation 1.0 4320 < th dose independent rect. 22 22
657 248.58 radiation 1.0 4320 < th dose independent no NA NA
659 248.58 radiation 1.0 4320 < th dose independent rect. 2 18
771 248.71 wind 7.0 43200 < th dose dependent rect. 11 1
811 248.84 humidity 80.0 43200 > th dose independent rect. 10 7
849 249.04 precipitation 0.1 43200 > th dose independent rect. 16 1
851 249.05 precipitation 0.1 43200 < th dose independent rect. 16 1
854 249.05 precipitation 0.1 43200 < th dose dependent rect. 16 1
860 249.07 humidity 90.0 14400 > th dose dependent rect. 1 1
897 249.18 radiation 20.0 14400 > th dose dependent rect. 16 15
908 249.23 humidity 90.0 720 < th dose independent rect. 20 4
937 249.39 radiation 1.0 4320 > th dose independent rect. 7 23
938 249.39 humidity 50.0 720 > th dose dependent rect. 18 9
947 249.43 humidity 90.0 43200 > th dose independent rect. 9 1
956 249.46 humidity 90.0 720 < th dose dependent rect. 18 14
959 249.48 radiation 1.0 4320 < th dose dependent rect. 2 21
960 249.49 radiation 1.0 4320 < th dose dependent rect. 2 18
970 249.51 radiation 1.0 4320 < th dose dependent rect. 4 16
974 249.51 radiation 40.0 4320 > th dose dependent rect. 13 21