Os04g0515900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NAM / CUC2-like protein.
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Os04g0515900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NAM / CUC2-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 318.95 | 0.839 | 7.04 | -1.81 | 3.83 | 1.59 | -1.44 | -7.61 | -0.241 | 7.11 | 26.06 | 1217 | -- | -- |
| 333.72 | 0.851 | 6.79 | -0.0888 | 3.84 | 0.872 | -0.923 | -- | 0.321 | 7.15 | 28 | 1205 | -- | -- |
| 324.13 | 0.839 | 7.03 | -1.79 | 3.83 | 1.61 | -- | -7.75 | -0.148 | 7.12 | 26.67 | 1224 | -- | -- |
| 329.95 | 0.846 | 6.76 | 0.099 | 3.78 | 0.869 | -- | -- | 0.355 | 7.11 | 33.4 | 1072 | -- | -- |
| 1077.7 | 1.54 | 6.92 | 0.158 | -- | -1.03 | -- | -3.05 | 0.269 | -- | 25.39 | 1339 | -- | -- |
| 357.74 | 0.887 | 6.81 | 0.261 | 3.8 | -- | -1.36 | -- | 0.211 | 6.95 | -- | -- | -- | -- |
| 362.51 | 0.892 | 6.81 | 0.237 | 3.79 | -- | -- | -- | 0.215 | 6.96 | -- | -- | -- | -- |
| 1081.52 | 1.54 | 6.88 | 0.481 | -- | -1.26 | -- | -- | 0.352 | -- | 25.39 | 1339 | -- | -- |
| 329.67 | 0.846 | 6.78 | -- | 3.8 | 0.859 | -- | -- | 0.342 | 7.09 | 33.4 | 1059 | -- | -- |
| 1118.79 | 1.56 | 6.89 | 0.315 | -- | -- | -- | -- | 0.285 | -- | -- | -- | -- | -- |
| 363.99 | 0.892 | 6.82 | -- | 3.8 | -- | -- | -- | 0.188 | 6.96 | -- | -- | -- | -- |
| 1085.23 | 1.53 | 6.86 | -- | -- | 0.862 | -- | -- | 0.409 | -- | 33.5 | 1202 | -- | -- |
| 1121.41 | 1.56 | 6.9 | -- | -- | -- | -- | -- | 0.25 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 297.13 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 2 | 299.20 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 3 | 300.14 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 4 | 300.50 | wind | 3 | 43200 | > th | dose dependent | rect. | 10 | 8 |
| 8 | 300.62 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 4 |
| 22 | 300.64 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 10 |
| 24 | 300.69 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 26 | 300.76 | temperature | 30 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 61 | 300.95 | temperature | 30 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 64 | 300.98 | temperature | 30 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 65 | 300.98 | temperature | 30 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 69 | 301.02 | temperature | 30 | 43200 | < th | dose independent | rect. | 22 | 12 |
| 70 | 301.03 | temperature | 30 | 43200 | < th | dose independent | rect. | 1 | 9 |
| 75 | 301.04 | wind | 9 | 43200 | < th | dose dependent | rect. | 10 | 6 |
| 80 | 301.15 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 9 |
| 97 | 301.21 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 116 | 301.26 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 181 | 301.54 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 7 |
| 194 | 301.65 | wind | 5 | 43200 | > th | dose independent | rect. | 12 | 4 |
| 199 | 301.67 | temperature | 30 | 43200 | > th | dose dependent | sin | 8 | NA |
| 208 | 301.77 | wind | 3 | 43200 | > th | dose dependent | sin | 21 | NA |
| 212 | 301.81 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 6 |
| 233 | 301.95 | wind | 5 | 43200 | < th | dose independent | sin | 20 | NA |
| 240 | 302.01 | wind | 9 | 43200 | < th | dose dependent | rect. | 12 | 2 |
| 244 | 302.07 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 11 |
| 251 | 302.11 | wind | 1 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 270 | 302.19 | wind | 5 | 43200 | < th | dose independent | rect. | 12 | 4 |
| 309 | 302.26 | wind | 5 | 43200 | < th | dose independent | rect. | 12 | 16 |
| 316 | 302.31 | temperature | 25 | 43200 | > th | dose dependent | rect. | 1 | 2 |
| 317 | 302.32 | wind | 5 | 43200 | > th | dose independent | rect. | 12 | 14 |
| 337 | 302.43 | wind | 5 | 43200 | > th | dose independent | sin | 19 | NA |
| 353 | 302.50 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 17 |
| 492 | 303.09 | temperature | 30 | 43200 | > th | dose independent | sin | 8 | NA |
| 514 | 303.14 | temperature | 30 | 43200 | < th | dose independent | sin | 8 | NA |
| 594 | 303.51 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 648 | 303.69 | wind | 9 | 43200 | < th | dose dependent | sin | 23 | NA |
| 774 | 304.15 | temperature | 30 | 43200 | > th | dose dependent | no | NA | NA |
| 885 | 304.17 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 6 |