Os04g0514400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Putative DNA binding domain containing protein.
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Os04g0514400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Putative DNA binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.63 | 0.35 | 13 | -0.686 | 2.68 | 1.28 | 0.259 | 0.84 | -0.591 | 15.8 | 22.8 | 208 | -- | -- |
| 56.25 | 0.349 | 13 | -0.607 | 2.66 | 1.11 | 0.0717 | -- | -0.574 | 15.8 | 23 | 231 | -- | -- |
| 55.79 | 0.348 | 13 | -0.668 | 2.68 | 1.28 | -- | 0.766 | -0.587 | 15.8 | 22.7 | 216 | -- | -- |
| 56.25 | 0.349 | 13 | -0.601 | 2.66 | 1.11 | -- | -- | -0.573 | 15.8 | 23 | 231 | -- | -- |
| 395.62 | 0.931 | 13.1 | -1.02 | -- | -1.34 | -- | -1.39 | -1.01 | -- | 26.69 | 1120 | -- | -- |
| 70.48 | 0.394 | 13 | -0.855 | 2.56 | -- | 0.103 | -- | -0.724 | 15.9 | -- | -- | -- | -- |
| 70.51 | 0.393 | 13 | -0.854 | 2.56 | -- | -- | -- | -0.724 | 15.9 | -- | -- | -- | -- |
| 343.3 | 0.863 | 13.1 | -1.44 | -- | -2.46 | -- | -- | -1.11 | -- | 58.09 | 139 | -- | -- |
| 64.86 | 0.375 | 13 | -- | 2.69 | 1.38 | -- | -- | -0.491 | 15.8 | 22.96 | 234 | -- | -- |
| 430.78 | 0.97 | 13 | -0.96 | -- | -- | -- | -- | -0.792 | -- | -- | -- | -- | -- |
| 89.72 | 0.443 | 13 | -- | 2.58 | -- | -- | -- | -0.628 | 15.8 | -- | -- | -- | -- |
| 394.4 | 0.925 | 13.1 | -- | -- | -1.99 | -- | -- | -0.902 | -- | 70.86 | 133 | -- | -- |
| 455.06 | 0.996 | 13 | -- | -- | -- | -- | -- | -0.685 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.30 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 11 |
| 2 | 45.43 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 12 |
| 6 | 46.96 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 12 |
| 7 | 47.15 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 15 | 47.66 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 11 |
| 24 | 48.59 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 13 |
| 52 | 49.70 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 15 |
| 72 | 50.11 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 3 |
| 74 | 50.12 | temperature | 25 | 270 | < th | dose dependent | sin | 11 | NA |
| 99 | 50.49 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 5 |
| 104 | 50.58 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 3 |
| 108 | 50.67 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 1 |
| 113 | 50.68 | temperature | 20 | 270 | < th | dose independent | rect. | 19 | 13 |
| 128 | 50.80 | temperature | 20 | 270 | > th | dose independent | sin | 12 | NA |
| 148 | 51.01 | temperature | 25 | 10 | < th | dose dependent | sin | 9 | NA |
| 196 | 51.58 | temperature | 20 | 270 | < th | dose independent | sin | 11 | NA |
| 251 | 52.06 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 2 |
| 300 | 52.30 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 7 |
| 518 | 53.52 | temperature | 15 | 270 | > th | dose dependent | sin | 11 | NA |
| 708 | 54.29 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 9 |
| 714 | 54.32 | temperature | 10 | 10 | > th | dose dependent | sin | 9 | NA |
| 917 | 54.88 | temperature | 20 | 30 | > th | dose independent | rect. | 11 | 20 |
| 936 | 54.99 | temperature | 20 | 270 | > th | dose independent | rect. | 9 | 22 |