FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0513900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase, family 1 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.86 (0.0951) R2 : 0.732
β1 : -0.51 (0.724) R2dD : 0.00539 R2D : 0.0585
β2 : 2.21 (0.123) R2dC : 0.194 R2C : 0.2
β3 : -1.1 (0.479) R2dE : 0.0494 R2E : -0.175
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 21.6 (4.12) R2dD*E : 0.479 R2D*E : 0.336
γ1 : -1.75 (0.104) R2dN8 : 0.239 R2N8 : 0.0741
σ : 0.879
deviance : 355.96
__
_____
C
peak time of C : 5.07
E
wheather : temperature
threshold : 29.74
memory length : 1198
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
351.18 0.88 5.87 -0.608 2.21 -1.04 1.4 21.1 -1.75 5.16 29.75 1198 -- --
405.73 0.938 6.43 -4.26 2.61 0.956 2.07 -- -2.41 4.86 31.35 13379 -- --
355.96 0.879 5.86 -0.51 2.21 -1.1 -- 21.6 -1.75 5.07 29.74 1198 -- --
383.02 0.912 6.37 -3.87 2.34 1.22 -- -- -1.89 5.11 31.01 1198 -- --
609.17 1.15 5.85 -0.253 -- -1.03 -- 22.7 -1.66 -- 29.68 1240 -- --
454.28 0.999 6.34 -3.84 2.36 -- 1.69 -- -2.04 4.9 -- -- -- --
461.48 1.01 6.35 -3.85 2.37 -- -- -- -2.05 4.83 -- -- -- --
640.21 1.18 6.31 -4.21 -- 1.55 -- -- -1.74 -- 29.32 1246 -- --
821.44 1.33 6.22 -- 2.25 0.852 -- -- -1.47 5.08 33.5 1174 -- --
758.4 1.29 6.37 -3.76 -- -- -- -- -1.99 -- -- -- -- --
851.87 1.37 6.25 -- 2.3 -- -- -- -1.62 4.88 -- -- -- --
1079.65 1.53 6.24 -- -- 1.52 -- -- -1.39 -- 34.84 1368 -- --
1131.39 1.57 6.28 -- -- -- -- -- -1.57 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 356.55 temperature 30 1440 > th dose dependent rect. 15 21
2 356.69 temperature 30 1440 > th dose dependent sin 14 NA
6 356.88 temperature 30 1440 > th dose dependent rect. 14 5
140 358.48 temperature 30 1440 > th dose dependent no NA NA
254 359.03 temperature 30 1440 > th dose dependent rect. 17 23
255 359.09 temperature 30 1440 < th dose independent sin 11 NA
283 359.95 temperature 30 1440 > th dose independent sin 11 NA
295 361.01 temperature 30 1440 < th dose independent rect. 18 17
318 362.12 temperature 30 1440 > th dose independent rect. 15 21
321 362.30 temperature 30 1440 < th dose independent rect. 15 21
326 362.47 temperature 30 1440 > th dose independent rect. 17 19
354 363.47 temperature 30 1440 > th dose independent rect. 17 22
395 364.14 temperature 30 1440 < th dose independent rect. 17 22
401 364.47 temperature 30 1440 > th dose dependent rect. 10 2
410 364.81 temperature 30 1440 < th dose independent rect. 17 6
412 364.90 temperature 30 1440 > th dose independent rect. 15 4
433 365.03 temperature 30 1440 > th dose independent rect. 9 10
474 365.30 temperature 30 1440 < th dose independent rect. 17 10
478 365.38 temperature 30 1440 > th dose independent no NA NA
573 365.42 temperature 30 1440 < th dose independent rect. 17 4
597 365.72 temperature 30 1440 > th dose independent rect. 17 1
598 365.73 temperature 30 1440 < th dose independent rect. 15 8
602 365.75 temperature 30 1440 < th dose independent rect. 15 14
605 365.77 temperature 30 1440 < th dose independent rect. 15 12
613 365.91 temperature 30 1440 < th dose independent rect. 15 6
648 366.07 temperature 30 1440 > th dose independent rect. 11 23
687 366.22 temperature 30 1440 < th dose independent rect. 9 14
688 366.22 temperature 30 1440 < th dose independent rect. 9 20
689 366.22 temperature 30 1440 < th dose independent rect. 9 22
692 366.23 temperature 30 1440 < th dose independent rect. 9 18
694 366.24 humidity 50 14400 < th dose independent rect. 16 1
700 366.29 temperature 30 1440 < th dose independent rect. 9 12
702 366.31 temperature 30 1440 < th dose independent rect. 2 21
719 366.33 temperature 30 1440 < th dose independent rect. 4 19
723 366.34 temperature 30 1440 < th dose independent rect. 6 17
727 366.34 temperature 30 1440 < th dose independent rect. 4 23
728 366.34 temperature 30 1440 < th dose independent rect. 22 23
730 366.35 temperature 30 1440 < th dose independent no NA NA
738 366.35 temperature 30 1440 < th dose independent rect. 6 21
756 366.37 temperature 30 1440 < th dose independent rect. 20 23
821 366.62 temperature 30 1440 > th dose independent rect. 9 3
853 367.04 temperature 30 1440 < th dose independent rect. 9 3
871 367.11 humidity 50 14400 > th dose independent rect. 15 18
876 367.25 temperature 30 1440 < th dose independent rect. 11 23
929 367.46 temperature 30 1440 < th dose independent rect. 22 14
937 367.61 temperature 30 1440 < th dose independent rect. 2 10
941 367.63 temperature 30 1440 < th dose independent rect. 4 8
942 367.64 humidity 50 14400 > th dose independent rect. 15 13
960 367.72 temperature 30 1440 > th dose independent rect. 9 6
991 368.07 humidity 50 14400 > th dose independent rect. 15 5