Os04g0513400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Beta-glucosidase.
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Os04g0513400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Beta-glucosidase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 214.34 | 0.688 | 8.83 | -1.64 | 2.38 | -6.17 | -1.05 | -8.64 | -0.19 | 8.49 | 0.5374 | 1490 | -- | -- |
| 235.05 | 0.714 | 9.02 | -2.3 | 2.27 | -4.62 | -1.19 | -- | -0.413 | 8.1 | 1.672 | 1526 | -- | -- |
| 216.84 | 0.686 | 8.82 | -1.69 | 2.43 | -6.23 | -- | -8.88 | -0.177 | 8.63 | 0.4457 | 1479 | -- | -- |
| 230.94 | 0.708 | 8.97 | -2.28 | 2.36 | -4.47 | -- | -- | -0.355 | 8.08 | 1.72 | 1525 | -- | -- |
| 503.27 | 1.04 | 8.92 | -1.52 | -- | -6.75 | -- | -8.59 | -0.226 | -- | 0.5828 | 1520 | -- | -- |
| 409.7 | 0.949 | 8.83 | -1.42 | 2.83 | -- | -0.611 | -- | 0.2 | 9.16 | -- | -- | -- | -- |
| 411.01 | 0.949 | 8.83 | -1.44 | 2.83 | -- | -- | -- | 0.199 | 9.15 | -- | -- | -- | -- |
| 515.13 | 1.06 | 9.05 | -2.37 | -- | -5.4 | -- | -- | -0.452 | -- | 1.938 | 1547 | -- | -- |
| 351.54 | 0.873 | 8.93 | -- | 2.43 | -3.47 | -- | -- | -0.0868 | 8.13 | 2.41 | 1549 | -- | -- |
| 874.92 | 1.38 | 8.9 | -1.45 | -- | -- | -- | -- | 0.214 | -- | -- | -- | -- | -- |
| 465.9 | 1.01 | 8.79 | -- | 2.83 | -- | -- | -- | 0.36 | 9.19 | -- | -- | -- | -- |
| 576.9 | 1.12 | 8.88 | -- | -- | -1.81 | -- | -- | 0.342 | -- | 1.938 | 1547 | -- | -- |
| 930.49 | 1.42 | 8.87 | -- | -- | -- | -- | -- | 0.375 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 218.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 14 | 226.16 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 17 | 227.10 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 18 | 227.24 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 25 | 228.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 27 | 229.01 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 20 |
| 29 | 229.12 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 18 |
| 38 | 230.43 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 39 | 230.45 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 40 | 230.45 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 43 | 230.50 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 44 | 230.50 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 74 | 230.66 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 89 | 231.01 | radiation | 1 | 1440 | < th | dose dependent | sin | 15 | NA |
| 97 | 232.13 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 99 | 232.23 | radiation | 1 | 1440 | < th | dose dependent | sin | 23 | NA |
| 101 | 232.47 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 108 | 232.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 110 | 232.85 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 116 | 233.07 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 15 |
| 120 | 233.22 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 181 | 235.13 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 202 | 235.60 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 217 | 235.81 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 222 | 235.93 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 236 | 236.16 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 15 |
| 248 | 236.26 | temperature | 25 | 1440 | > th | dose dependent | rect. | 24 | 18 |
| 267 | 236.39 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 274 | 236.50 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 21 |
| 339 | 237.30 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 354 | 237.49 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 442 | 238.18 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 457 | 238.27 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 461 | 238.34 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 463 | 238.42 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 14 |
| 472 | 238.66 | radiation | 20 | 14400 | < th | dose independent | rect. | 16 | 8 |
| 473 | 238.67 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 480 | 238.77 | radiation | 20 | 14400 | < th | dose independent | rect. | 16 | 12 |
| 484 | 238.79 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 503 | 238.84 | radiation | 20 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 511 | 238.95 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 537 | 239.51 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 544 | 239.63 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 6 |
| 582 | 240.16 | radiation | 1 | 1440 | > th | dose independent | sin | 15 | NA |
| 586 | 240.21 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 633 | 241.66 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 635 | 241.68 | radiation | 1 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 650 | 241.90 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 656 | 241.98 | radiation | 1 | 1440 | > th | dose independent | sin | 22 | NA |
| 675 | 242.05 | radiation | 1 | 1440 | < th | dose independent | sin | 14 | NA |
| 704 | 242.38 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 729 | 242.60 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 825 | 243.66 | radiation | 1 | 1440 | < th | dose independent | sin | 22 | NA |
| 833 | 243.72 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 859 | 243.99 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 870 | 244.06 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 878 | 244.19 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 883 | 244.21 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 920 | 244.53 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 937 | 244.69 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 979 | 245.09 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 983 | 245.09 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 17 |
| 994 | 245.12 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 13 |