Os04g0513100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Beta-glucosidase.
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Os04g0513100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Beta-glucosidase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 174.23 | 0.62 | 6.73 | -1.67 | 0.498 | -1.9 | 0.184 | -2.15 | -0.133 | 9.68 | 0.5973 | 1412 | -- | -- |
| 176.95 | 0.62 | 6.74 | -1.87 | 0.598 | -1.46 | 0.0548 | -- | -0.128 | 9.57 | 0.6693 | 1383 | -- | -- |
| 174.35 | 0.615 | 6.73 | -1.67 | 0.505 | -1.88 | -- | -2.08 | -0.132 | 9.75 | 0.5918 | 1410 | -- | -- |
| 176.78 | 0.619 | 6.74 | -1.88 | 0.575 | -1.53 | -- | -- | -0.139 | 9.78 | 0.67 | 1383 | -- | -- |
| 183.62 | 0.631 | 6.74 | -1.67 | -- | -1.83 | -- | -1.96 | -0.121 | -- | 0.6 | 1452 | -- | -- |
| 202.38 | 0.667 | 6.72 | -1.56 | 0.39 | -- | -0.0148 | -- | 0.0323 | 9.02 | -- | -- | -- | -- |
| 202.38 | 0.666 | 6.72 | -1.56 | 0.39 | -- | -- | -- | 0.0323 | 9 | -- | -- | -- | -- |
| 186.08 | 0.635 | 6.76 | -1.76 | -- | -1.44 | -- | -- | -0.131 | -- | 0.67 | 1462 | -- | -- |
| 258.2 | 0.748 | 6.73 | -- | 0.577 | -0.771 | -- | -- | 0.054 | 9.92 | 2.15 | 1362 | -- | -- |
| 211.12 | 0.679 | 6.73 | -1.56 | -- | -- | -- | -- | 0.0347 | -- | -- | -- | -- | -- |
| 266.56 | 0.764 | 6.68 | -- | 0.389 | -- | -- | -- | 0.206 | 9.31 | -- | -- | -- | -- |
| 263.97 | 0.757 | 6.71 | -- | -- | -0.704 | -- | -- | 0.0977 | -- | 8.216 | 1556 | -- | -- |
| 275.4 | 0.775 | 6.69 | -- | -- | -- | -- | -- | 0.208 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 165.01 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 3 | 165.07 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 20 | 167.18 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 39 | 169.49 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 6 |
| 44 | 169.67 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 6 |
| 48 | 169.92 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 63 | 170.55 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 2 |
| 72 | 171.05 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 84 | 171.49 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 4 |
| 87 | 171.56 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 2 |
| 106 | 171.73 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 9 |
| 112 | 172.00 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 136 | 172.85 | humidity | 80 | 720 | < th | dose independent | rect. | 18 | 1 |
| 140 | 172.92 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 156 | 173.21 | humidity | 80 | 720 | < th | dose independent | rect. | 17 | 4 |
| 159 | 173.24 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 182 | 173.60 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 185 | 173.65 | humidity | 70 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 193 | 173.76 | humidity | 90 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 204 | 174.03 | temperature | 25 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 212 | 174.18 | temperature | 25 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 240 | 174.54 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 250 | 174.66 | temperature | 30 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 254 | 174.70 | temperature | 30 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 286 | 175.09 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 288 | 175.11 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 19 |
| 303 | 175.28 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 10 |
| 324 | 175.41 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 345 | 175.50 | temperature | 25 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 351 | 175.53 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 361 | 175.57 | temperature | 25 | 43200 | > th | dose dependent | rect. | 8 | 4 |
| 364 | 175.57 | temperature | 25 | 43200 | > th | dose dependent | rect. | 23 | 14 |
| 369 | 175.59 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 389 | 175.63 | temperature | 30 | 43200 | < th | dose independent | rect. | 7 | 8 |
| 407 | 175.63 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 14 |
| 418 | 175.65 | wind | 5 | 43200 | > th | dose dependent | sin | 20 | NA |
| 479 | 175.70 | temperature | 25 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 500 | 175.71 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 523 | 175.73 | temperature | 25 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 531 | 175.74 | temperature | 25 | 43200 | > th | dose dependent | sin | 6 | NA |
| 535 | 175.75 | temperature | 30 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 536 | 175.75 | temperature | 25 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 537 | 175.75 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 548 | 175.77 | temperature | 30 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 594 | 175.81 | temperature | 30 | 43200 | < th | dose independent | rect. | 12 | 10 |
| 596 | 175.81 | temperature | 30 | 43200 | < th | dose independent | rect. | 12 | 13 |
| 601 | 175.81 | temperature | 30 | 43200 | < th | dose independent | rect. | 12 | 19 |
| 616 | 175.82 | radiation | 1 | 1440 | < th | dose dependent | sin | 14 | NA |
| 658 | 175.86 | temperature | 30 | 43200 | < th | dose independent | sin | 1 | NA |
| 691 | 175.90 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 692 | 175.90 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 696 | 175.91 | temperature | 30 | 43200 | > th | dose independent | sin | 0 | NA |
| 711 | 175.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 843 | 175.99 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 859 | 176.02 | temperature | 30 | 43200 | < th | dose independent | no | NA | NA |
| 892 | 176.02 | temperature | 30 | 43200 | < th | dose independent | rect. | 6 | 19 |
| 991 | 176.04 | temperature | 25 | 43200 | < th | dose independent | rect. | 22 | 2 |