Os04g0513000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0513000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.43 | 0.353 | 10.6 | 0.291 | 1.04 | -0.793 | 0.112 | 12.4 | -0.543 | 13 | 29.41 | 3638 | -- | -- |
| 66.46 | 0.383 | 10.8 | -1.54 | 0.873 | 1.1 | -0.172 | -- | -0.663 | 12.5 | 29.41 | 3638 | -- | -- |
| 56.47 | 0.35 | 10.6 | 0.292 | 1.04 | -0.762 | -- | 12.1 | -0.53 | 13 | 29.27 | 3627 | -- | -- |
| 59.99 | 0.361 | 10.9 | -1.75 | 1.02 | 0.702 | -- | -- | -0.991 | 13.1 | 31.8 | 12958 | -- | -- |
| 107.34 | 0.485 | 10.9 | -1.6 | -- | 1.6 | -- | 0.565 | -0.668 | -- | 29.01 | 3263 | -- | -- |
| 77.7 | 0.413 | 10.9 | -1.48 | 0.992 | -- | -0.0272 | -- | -0.698 | 12.9 | -- | -- | -- | -- |
| 77.7 | 0.413 | 10.9 | -1.48 | 0.992 | -- | -- | -- | -0.698 | 12.9 | -- | -- | -- | -- |
| 100.84 | 0.47 | 10.9 | -1.65 | -- | 1.67 | -- | -- | -0.685 | -- | 28.31 | 18962 | -- | -- |
| 130.71 | 0.535 | 10.8 | -- | 0.967 | 0.928 | -- | -- | -0.512 | 12.8 | 31.71 | 18306 | -- | -- |
| 139.13 | 0.551 | 10.9 | -1.51 | -- | -- | -- | -- | -0.717 | -- | -- | -- | -- | -- |
| 135.29 | 0.544 | 10.8 | -- | 1.02 | -- | -- | -- | -0.534 | 12.9 | -- | -- | -- | -- |
| 172.01 | 0.613 | 10.8 | -- | -- | 1.41 | -- | -- | -0.509 | -- | 28.31 | 18962 | -- | -- |
| 199.65 | 0.66 | 10.8 | -- | -- | -- | -- | -- | -0.549 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.50 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 2 | 50.54 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 8 | 50.65 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 12 | 50.75 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 23 | 10 |
| 15 | 51.29 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 29 | 52.29 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 88 | 53.95 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 151 | 54.36 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 169 | 54.44 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 189 | 54.65 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 191 | 54.65 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 193 | 54.68 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 200 | 54.72 | temperature | 30.0 | 4320 | < th | dose independent | sin | 8 | NA |
| 242 | 54.88 | temperature | 30.0 | 4320 | > th | dose independent | sin | 8 | NA |
| 245 | 54.98 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 259 | 55.18 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 260 | 55.19 | temperature | 25.0 | 270 | > th | dose dependent | sin | 9 | NA |
| 434 | 55.71 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 472 | 55.85 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 521 | 55.93 | temperature | 30.0 | 4320 | > th | dose dependent | sin | 8 | NA |
| 529 | 56.02 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 4 |
| 732 | 56.68 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 755 | 56.71 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 4 |
| 831 | 56.83 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 953 | 57.07 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 9 | 21 |
| 995 | 57.09 | temperature | 30.0 | 4320 | < th | dose independent | no | NA | NA |
| 996 | 57.09 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 1 |