Os04g0512900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os04g0512900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 156.49 | 0.588 | 5.04 | 0.51 | 0.786 | 0.863 | -0.331 | -10.9 | 0.818 | 23.3 | 32.53 | 1321 | -- | -- |
| 166.77 | 0.601 | 4.74 | 2.29 | 1.07 | -0.449 | -0.54 | -- | 1.03 | 23.7 | 24.9 | 1118 | -- | -- |
| 156.94 | 0.583 | 5.04 | 0.522 | 0.796 | 0.856 | -- | -10.9 | 0.815 | 23.3 | 32.51 | 1296 | -- | -- |
| 159.83 | 0.589 | 4.82 | 2.31 | 0.87 | -0.531 | -- | -- | 0.922 | 23.1 | 25.8 | 1080 | -- | -- |
| 194.73 | 0.65 | 5.01 | 0.508 | -- | 0.91 | -- | -10.7 | 0.846 | -- | 31.88 | 1484 | -- | -- |
| 168.16 | 0.608 | 4.82 | 2.14 | 0.752 | -- | -0.382 | -- | 0.889 | 23.1 | -- | -- | -- | -- |
| 168.77 | 0.608 | 4.82 | 2.16 | 0.755 | -- | -- | -- | 0.891 | 23 | -- | -- | -- | -- |
| 198.16 | 0.656 | 4.81 | 2.23 | -- | -0.622 | -- | -- | 0.858 | -- | 35.1 | 1466 | -- | -- |
| 286.39 | 0.792 | 4.88 | -- | 0.9 | 0.576 | -- | -- | 0.637 | 23.9 | 26.1 | 73 | -- | -- |
| 204.24 | 0.668 | 4.8 | 2.17 | -- | -- | -- | -- | 0.896 | -- | -- | -- | -- | -- |
| 291.47 | 0.799 | 4.87 | -- | 0.775 | -- | -- | -- | 0.65 | 23.2 | -- | -- | -- | -- |
| 324.99 | 0.84 | 4.85 | -- | -- | 0.405 | -- | -- | 0.694 | -- | 29.59 | 612 | -- | -- |
| 328.98 | 0.847 | 4.86 | -- | -- | -- | -- | -- | 0.655 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 149.36 | wind | 1 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 2 | 149.77 | wind | 1 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 4 | 150.79 | wind | 3 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 12 | 152.54 | wind | 3 | 1440 | < th | dose dependent | rect. | 3 | 4 |
| 27 | 153.84 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 12 |
| 30 | 153.94 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 14 |
| 47 | 154.35 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 48 | 154.37 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 62 | 154.79 | wind | 1 | 1440 | < th | dose independent | rect. | 3 | 10 |
| 64 | 154.83 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 16 |
| 66 | 154.84 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 16 |
| 71 | 154.98 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 16 |
| 73 | 155.00 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 12 |
| 75 | 155.02 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 14 |
| 82 | 155.13 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 89 | 155.23 | wind | 1 | 1440 | > th | dose dependent | rect. | 3 | 3 |
| 96 | 155.30 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 15 |
| 101 | 155.40 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 113 | 155.55 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 119 | 155.59 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 18 |
| 126 | 155.66 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 129 | 155.69 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 144 | 155.84 | wind | 1 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 148 | 155.85 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 170 | 156.00 | wind | 1 | 1440 | < th | dose independent | rect. | 3 | 7 |
| 173 | 156.01 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 179 | 156.08 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 20 |
| 183 | 156.10 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 193 | 156.11 | humidity | 70 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 195 | 156.15 | wind | 1 | 1440 | > th | dose independent | rect. | 3 | 10 |
| 198 | 156.17 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 6 |
| 202 | 156.22 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 13 |
| 222 | 156.31 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 234 | 156.35 | wind | 7 | 43200 | > th | dose dependent | rect. | 16 | 16 |
| 242 | 156.40 | temperature | 30 | 1440 | > th | dose dependent | sin | 10 | NA |
| 243 | 156.40 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 250 | 156.43 | temperature | 30 | 1440 | > th | dose dependent | rect. | 9 | 2 |
| 252 | 156.43 | wind | 7 | 43200 | > th | dose dependent | rect. | 16 | 9 |
| 255 | 156.44 | wind | 7 | 43200 | > th | dose dependent | rect. | 16 | 11 |
| 258 | 156.46 | wind | 7 | 43200 | > th | dose independent | rect. | 16 | 16 |
| 259 | 156.46 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 261 | 156.47 | wind | 7 | 43200 | > th | dose independent | rect. | 16 | 11 |
| 263 | 156.47 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 267 | 156.48 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 270 | 156.49 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 9 |
| 272 | 156.49 | wind | 7 | 43200 | > th | dose dependent | rect. | 16 | 5 |
| 273 | 156.49 | wind | 7 | 43200 | > th | dose dependent | rect. | 16 | 7 |
| 307 | 156.56 | wind | 7 | 43200 | < th | dose independent | rect. | 16 | 11 |
| 311 | 156.57 | wind | 7 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 334 | 156.60 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 382 | 156.71 | humidity | 80 | 720 | < th | dose independent | rect. | 16 | 5 |
| 449 | 156.88 | wind | 1 | 1440 | > th | dose independent | rect. | 3 | 7 |
| 478 | 156.93 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 501 | 157.00 | wind | 1 | 1440 | < th | dose independent | rect. | 3 | 14 |
| 535 | 157.04 | wind | 1 | 1440 | > th | dose dependent | rect. | 2 | 7 |
| 538 | 157.05 | wind | 7 | 43200 | > th | dose independent | sin | 13 | NA |
| 552 | 157.07 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 570 | 157.11 | wind | 7 | 43200 | < th | dose independent | sin | 13 | NA |
| 606 | 157.18 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 3 |
| 663 | 157.23 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 2 |
| 769 | 157.36 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 780 | 157.37 | temperature | 30 | 1440 | > th | dose dependent | rect. | 9 | 10 |
| 795 | 157.38 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 1 |
| 805 | 157.38 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 910 | 157.40 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 922 | 157.41 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 2 |
| 931 | 157.42 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 932 | 157.42 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 11 |
| 933 | 157.42 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 15 |
| 947 | 157.43 | temperature | 30 | 1440 | > th | dose dependent | rect. | 14 | 5 |