Os04g0509800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0509800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.5 | 0.408 | 12.7 | 1.21 | 1.46 | -1.04 | -0.124 | -3.08 | 0.264 | 23.3 | 29.24 | 1247 | -- | -- |
| 83.67 | 0.426 | 12.8 | 0.585 | 1.48 | -0.946 | 0.13 | -- | 0.143 | 23.4 | 51.78 | 1289 | -- | -- |
| 75.57 | 0.405 | 12.7 | 1.21 | 1.46 | -1.03 | -- | -3.04 | 0.262 | 23.3 | 29.2 | 1249 | -- | -- |
| 83.72 | 0.426 | 12.8 | 0.572 | 1.47 | -0.959 | -- | -- | 0.144 | 23.4 | 174.1 | 1263 | -- | -- |
| 181.61 | 0.628 | 12.7 | 0.886 | -- | -1.91 | -- | -2.75 | 0.14 | -- | 41.56 | 914 | -- | -- |
| 98.62 | 0.466 | 12.7 | 0.871 | 1.55 | -- | 0.183 | -- | 0.315 | 23.5 | -- | -- | -- | -- |
| 98.76 | 0.465 | 12.7 | 0.863 | 1.55 | -- | -- | -- | 0.314 | 23.5 | -- | -- | -- | -- |
| 187.79 | 0.638 | 12.8 | 0.361 | -- | -1.98 | -- | -- | 0.0153 | -- | 81.54 | 899 | -- | -- |
| 82.85 | 0.424 | 12.8 | -- | 1.52 | -1.07 | -- | -- | -0.0812 | 23.5 | 179.9 | 21094 | -- | -- |
| 250.26 | 0.739 | 12.7 | 0.905 | -- | -- | -- | -- | 0.331 | -- | -- | -- | -- | -- |
| 118.41 | 0.509 | 12.7 | -- | 1.56 | -- | -- | -- | 0.218 | 23.5 | -- | -- | -- | -- |
| 190.02 | 0.642 | 12.8 | -- | -- | -2.11 | -- | -- | -0.116 | -- | 30.3 | 896 | -- | -- |
| 271.88 | 0.77 | 12.7 | -- | -- | -- | -- | -- | 0.231 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 14 | 73.92 | temperature | 20 | 14400 | < th | dose dependent | rect. | 22 | 2 |
| 20 | 74.10 | temperature | 20 | 14400 | < th | dose dependent | sin | 16 | NA |
| 28 | 74.28 | temperature | 20 | 14400 | < th | dose dependent | rect. | 13 | 13 |
| 29 | 74.28 | temperature | 20 | 14400 | < th | dose dependent | rect. | 12 | 16 |
| 41 | 74.34 | temperature | 20 | 14400 | < th | dose dependent | rect. | 16 | 9 |
| 68 | 74.43 | temperature | 20 | 14400 | < th | dose dependent | rect. | 3 | 21 |
| 131 | 74.86 | temperature | 20 | 14400 | < th | dose dependent | no | NA | NA |
| 254 | 75.21 | temperature | 20 | 720 | > th | dose dependent | sin | 11 | NA |
| 285 | 75.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 289 | 75.38 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 291 | 75.39 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 1 |
| 304 | 75.45 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 317 | 75.53 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 363 | 75.71 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 366 | 75.72 | temperature | 20 | 14400 | < th | dose dependent | sin | 1 | NA |
| 446 | 75.93 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 7 |
| 513 | 76.09 | temperature | 20 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 617 | 76.25 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 13 |
| 658 | 76.32 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 9 |
| 690 | 76.35 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 14 |
| 716 | 76.38 | temperature | 30 | 1440 | < th | dose dependent | sin | 14 | NA |
| 746 | 76.40 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 22 |
| 758 | 76.42 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 780 | 76.43 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 783 | 76.44 | temperature | 15 | 270 | > th | dose dependent | sin | 7 | NA |
| 812 | 76.47 | temperature | 30 | 1440 | < th | dose dependent | sin | 7 | NA |
| 846 | 76.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 870 | 76.52 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 9 |
| 945 | 76.60 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |