Os04g0509200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0509200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.91 | 0.373 | 8.03 | -0.954 | 0.425 | 0.749 | -0.528 | 3.98 | -0.121 | 3.46 | 21.45 | 4899 | -- | -- |
| 69.06 | 0.39 | 7.92 | -0.65 | 0.499 | -0.821 | -0.572 | -- | -0.0694 | 3.09 | 21.45 | 4899 | -- | -- |
| 63.67 | 0.372 | 8.04 | -0.945 | 0.423 | 0.783 | -- | 4.13 | -0.12 | 3.43 | 21.47 | 5119 | -- | -- |
| 67.89 | 0.384 | 7.93 | -0.835 | 0.422 | -0.947 | -- | -- | -0.101 | 3.28 | 16.08 | 8635 | -- | -- |
| 72.92 | 0.398 | 8.01 | -0.965 | -- | 0.476 | -- | 3.67 | -0.124 | -- | 21.05 | 3463 | -- | -- |
| 75.18 | 0.406 | 7.9 | -0.506 | 0.426 | -- | -0.57 | -- | 0.00569 | 3.48 | -- | -- | -- | -- |
| 76.19 | 0.409 | 7.9 | -0.496 | 0.424 | -- | -- | -- | 0.00899 | 3.49 | -- | -- | -- | -- |
| 76.96 | 0.409 | 7.92 | -0.823 | -- | -1.12 | -- | -- | -0.073 | -- | 15.3 | 8397 | -- | -- |
| 80.52 | 0.418 | 7.9 | -- | 0.427 | -0.606 | -- | -- | 0.0313 | 3.41 | 14.6 | 6906 | -- | -- |
| 86.23 | 0.434 | 7.9 | -0.478 | -- | -- | -- | -- | 0.0202 | -- | -- | -- | -- | -- |
| 82.66 | 0.425 | 7.89 | -- | 0.414 | -- | -- | -- | 0.0642 | 3.5 | -- | -- | -- | -- |
| 88.81 | 0.439 | 7.89 | -- | -- | -0.71 | -- | -- | 0.0534 | -- | 14.65 | 2733 | -- | -- |
| 92.24 | 0.448 | 7.89 | -- | -- | -- | -- | -- | 0.0732 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.69 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 2 | 62.24 | radiation | 20 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 16 | 62.60 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 31 | 62.67 | temperature | 20 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 32 | 62.71 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 5 |
| 36 | 62.74 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 10 |
| 74 | 62.86 | temperature | 20 | 4320 | < th | dose dependent | sin | 8 | NA |
| 78 | 62.87 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 119 | 62.99 | temperature | 20 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 123 | 63.00 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 172 | 63.13 | temperature | 20 | 43200 | < th | dose dependent | rect. | 5 | 5 |
| 183 | 63.15 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 193 | 63.15 | temperature | 20 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 257 | 63.22 | temperature | 20 | 43200 | < th | dose dependent | sin | 3 | NA |
| 409 | 63.32 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 10 |
| 416 | 63.32 | temperature | 20 | 43200 | < th | dose dependent | rect. | 18 | 16 |
| 453 | 63.33 | temperature | 20 | 43200 | < th | dose dependent | no | NA | NA |
| 491 | 63.33 | temperature | 20 | 43200 | < th | dose dependent | rect. | 8 | 23 |
| 656 | 63.43 | temperature | 20 | 4320 | < th | dose dependent | no | NA | NA |
| 719 | 63.50 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 9 |
| 720 | 63.50 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 9 |
| 738 | 63.51 | temperature | 20 | 4320 | < th | dose dependent | rect. | 2 | 23 |
| 753 | 63.53 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 5 |
| 783 | 63.57 | radiation | 1 | 43200 | < th | dose dependent | rect. | 15 | 2 |
| 799 | 63.59 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 821 | 63.62 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 830 | 63.63 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 837 | 63.64 | temperature | 20 | 43200 | < th | dose independent | rect. | 6 | 11 |
| 843 | 63.65 | temperature | 20 | 43200 | > th | dose independent | rect. | 10 | 9 |
| 858 | 63.66 | temperature | 20 | 43200 | > th | dose independent | rect. | 6 | 11 |
| 859 | 63.66 | temperature | 20 | 43200 | < th | dose independent | rect. | 9 | 11 |
| 871 | 63.67 | temperature | 20 | 43200 | > th | dose independent | rect. | 6 | 13 |
| 886 | 63.69 | temperature | 20 | 43200 | < th | dose independent | sin | 23 | NA |
| 896 | 63.70 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 897 | 63.70 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 911 | 63.71 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 912 | 63.71 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 917 | 63.71 | radiation | 30 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 947 | 63.73 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 953 | 63.74 | temperature | 20 | 43200 | > th | dose independent | sin | 23 | NA |
| 954 | 63.74 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |