Os04g0508800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Retroelement pol polyprotein-like.
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Os04g0508800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Retroelement pol polyprotein-like.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.65 | 0.324 | 10.6 | -0.262 | 0.621 | 0.74 | 0.00879 | 2.12 | 0.0773 | 8.14 | 67.14 | 1275 | -- | -- |
| 47.9 | 0.322 | 10.6 | -0.0821 | 0.593 | 0.845 | 0.209 | -- | 0.284 | 9.03 | 72.45 | 16258 | -- | -- |
| 47.63 | 0.321 | 10.6 | -0.257 | 0.626 | 0.718 | -- | 2.08 | 0.0734 | 8.18 | 66 | 1287 | -- | -- |
| 47.93 | 0.322 | 10.6 | -0.1 | 0.635 | 0.852 | -- | -- | 0.305 | 8.89 | 70.73 | 16185 | -- | -- |
| 57.89 | 0.354 | 10.6 | -0.0754 | -- | 1.04 | -- | 2.49 | 0.204 | -- | 61.84 | 680 | -- | -- |
| 65.26 | 0.379 | 10.7 | -0.0393 | 0.651 | -- | 0.219 | -- | 0.0389 | 8.9 | -- | -- | -- | -- |
| 65.42 | 0.379 | 10.7 | -0.032 | 0.65 | -- | -- | -- | 0.0389 | 8.88 | -- | -- | -- | -- |
| 55.62 | 0.347 | 10.7 | -0.0192 | -- | 1.12 | -- | -- | 0.125 | -- | 66 | 764 | -- | -- |
| 47.87 | 0.322 | 10.6 | -- | 0.609 | 0.86 | -- | -- | 0.299 | 8.94 | 69.52 | 16260 | -- | -- |
| 89.56 | 0.442 | 10.7 | -0.032 | -- | -- | -- | -- | 0.0435 | -- | -- | -- | -- | -- |
| 65.45 | 0.378 | 10.7 | -- | 0.65 | -- | -- | -- | 0.0425 | 8.88 | -- | -- | -- | -- |
| 55.61 | 0.347 | 10.7 | -- | -- | 1.12 | -- | -- | 0.116 | -- | 65 | 768 | -- | -- |
| 89.59 | 0.442 | 10.7 | -- | -- | -- | -- | -- | 0.0471 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.69 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 2 | 43.78 | temperature | 25 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 8 | 43.93 | humidity | 70 | 90 | > th | dose dependent | rect. | 5 | 22 |
| 11 | 43.98 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 7 |
| 13 | 43.98 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 17 |
| 25 | 44.00 | temperature | 25 | 14400 | > th | dose dependent | rect. | 13 | 15 |
| 31 | 44.00 | temperature | 25 | 14400 | > th | dose dependent | rect. | 22 | 20 |
| 74 | 44.05 | temperature | 25 | 14400 | > th | dose dependent | sin | 19 | NA |
| 75 | 44.05 | wind | 3 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 167 | 44.11 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 197 | 44.13 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 203 | 44.13 | temperature | 25 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 206 | 44.13 | temperature | 25 | 14400 | > th | dose dependent | rect. | 13 | 23 |
| 219 | 44.14 | temperature | 25 | 14400 | > th | dose dependent | rect. | 1 | 23 |
| 314 | 44.24 | temperature | 10 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 340 | 44.31 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 341 | 44.31 | wind | 3 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 349 | 44.32 | temperature | 30 | 14400 | < th | dose independent | rect. | 12 | 4 |
| 359 | 44.35 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 391 | 44.40 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 396 | 44.41 | temperature | 30 | 14400 | > th | dose independent | rect. | 12 | 4 |
| 515 | 44.58 | temperature | 30 | 14400 | < th | dose independent | rect. | 12 | 20 |
| 516 | 44.58 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 545 | 44.61 | wind | 3 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 561 | 44.62 | temperature | 25 | 14400 | > th | dose independent | rect. | 24 | 12 |
| 700 | 44.71 | temperature | 25 | 14400 | > th | dose independent | sin | 5 | NA |
| 716 | 44.72 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 723 | 44.72 | temperature | 25 | 14400 | < th | dose independent | rect. | 24 | 12 |
| 734 | 44.72 | temperature | 25 | 14400 | > th | dose independent | rect. | 23 | 22 |
| 782 | 44.75 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 813 | 44.76 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 3 |
| 839 | 44.78 | temperature | 30 | 14400 | < th | dose independent | sin | 16 | NA |
| 939 | 44.83 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 23 |
| 952 | 44.84 | temperature | 25 | 14400 | < th | dose independent | sin | 5 | NA |
| 993 | 44.85 | temperature | 25 | 14400 | < th | dose independent | rect. | 23 | 22 |