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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0508500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Snapdragon myb protein 305 homolog.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.87 (0.0493) R2 : 0.502
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.58 (0.199) R2dC : 1.03 R2C : -0.878
β3 : 4.61 (0.224) R2dE : 1.35 R2E : -0.553
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.433 (0.104) R2dN8 : 0.0237 R2N8 : 0.0248
σ : 0.923
deviance : 393.1
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_____
C
peak time of C : 11.4
E
wheather : temperature
threshold : 2.697
memory length : 308
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 12.6
open length of G : 13.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
376.95 0.912 3.86 0.872 2.59 3.43 1.15 2.88 0.556 12.4 7.605 269 12.9 13.4
385.03 0.914 3.9 0.611 2.64 3.77 -0.0288 -- 0.435 12 7.62 290 12.4 13.5
377.83 0.905 3.85 0.816 3.37 4.07 -- 1.31 0.574 11.9 -0.04349 296 12.8 13.1
381.73 0.91 3.85 0.692 3.54 4.41 -- -- 0.524 11.5 0.6464 292 12.8 13
469.07 1.01 3.95 0.689 -- 3.34 -- 0.47 0.499 -- 23.85 165 12.7 13.2
462.76 1.01 3.93 1.02 2.25 -- 2.21 -- 0.682 17.2 -- -- -- --
474.58 1.02 3.92 1.02 2.26 -- -- -- 0.693 17.1 -- -- -- --
427.43 0.963 3.98 0.913 -- 3.33 -- -- 0.533 -- 20.72 160 12.6 7.23
393.1 0.923 3.87 -- 3.58 4.61 -- -- 0.433 11.4 2.697 308 12.6 13.1
743.63 1.27 3.9 0.941 -- -- -- -- 0.635 -- -- -- -- --
502.14 1.05 3.95 -- 2.25 -- -- -- 0.579 17.1 -- -- -- --
431.92 0.968 3.94 -- -- 3.34 -- -- 0.434 -- 20.05 208 12.3 7.22
767 1.29 3.92 -- -- -- -- -- 0.531 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 379.22 temperature 10 270 > th dose dependent rect. 13 13
2 380.32 radiation 1 270 < th dose independent sin 20 NA
4 380.85 radiation 1 270 > th dose independent sin 19 NA
8 381.28 temperature 30 270 < th dose independent rect. 10 12
9 381.96 radiation 1 270 < th dose dependent sin 20 NA
10 382.21 temperature 25 270 > th dose dependent rect. 13 5
17 382.91 temperature 25 270 > th dose dependent rect. 13 21
18 382.98 temperature 25 270 > th dose dependent rect. 14 3
20 383.31 radiation 1 270 < th dose independent rect. 3 23
21 383.36 radiation 1 270 < th dose dependent rect. 2 23
23 383.40 radiation 20 270 < th dose dependent sin 14 NA
35 384.74 temperature 10 270 > th dose dependent rect. 21 22
37 384.86 radiation 1 270 > th dose independent rect. 10 23
58 386.29 temperature 25 270 > th dose dependent sin 20 NA
70 386.93 temperature 10 270 > th dose dependent sin 20 NA
71 386.94 temperature 20 10 > th dose dependent rect. 16 4
82 387.77 temperature 25 270 > th dose independent rect. 13 5
85 388.06 temperature 20 10 > th dose dependent rect. 14 6
104 389.03 temperature 20 720 > th dose dependent rect. 8 1
106 389.08 temperature 25 10 > th dose independent rect. 16 4
118 389.38 radiation 10 270 > th dose independent sin 14 NA
123 389.66 temperature 25 270 > th dose dependent rect. 7 12
129 389.84 radiation 1 270 > th dose independent rect. 13 6
144 389.92 temperature 25 270 > th dose independent rect. 14 3
160 390.24 radiation 20 270 < th dose independent sin 13 NA
178 390.50 temperature 30 270 < th dose dependent rect. 10 12
189 390.64 radiation 1 270 > th dose dependent sin 13 NA
200 390.78 temperature 25 10 > th dose independent rect. 14 6
207 390.92 temperature 10 270 > th dose dependent rect. 6 12
245 391.90 radiation 1 270 < th dose independent rect. 8 14
247 391.91 radiation 1 270 < th dose dependent rect. 8 14
283 392.40 radiation 1 270 > th dose dependent rect. 14 5
293 392.41 temperature 30 720 < th dose independent rect. 2 20
335 393.03 temperature 30 720 < th dose independent rect. 1 22
345 393.20 radiation 1 270 > th dose dependent rect. 15 2
346 393.21 temperature 15 90 > th dose dependent rect. 15 14
349 393.22 temperature 15 90 > th dose dependent rect. 3 16
357 393.31 radiation 1 14400 < th dose dependent rect. 3 2
379 393.61 radiation 20 270 > th dose independent rect. 14 17
428 393.74 humidity 70 270 > th dose independent sin 16 NA
534 394.59 humidity 50 270 > th dose independent rect. 9 13
544 394.68 temperature 15 10 > th dose dependent rect. 24 20
551 394.77 temperature 30 270 > th dose independent rect. 13 20
585 395.01 temperature 30 720 < th dose independent rect. 9 23
593 395.07 temperature 30 270 > th dose independent rect. 11 22
595 395.08 temperature 30 270 > th dose independent rect. 11 8
612 395.14 temperature 30 270 < th dose independent sin 20 NA
618 395.20 temperature 25 720 > th dose independent rect. 8 1
622 395.22 temperature 25 270 > th dose dependent rect. 7 19
633 395.30 temperature 25 270 > th dose dependent rect. 7 22
691 395.69 humidity 70 270 < th dose independent rect. 13 7
764 396.10 temperature 25 270 > th dose dependent rect. 4 22
778 396.16 temperature 30 270 > th dose independent sin 18 NA
779 396.17 temperature 30 270 < th dose dependent sin 20 NA
782 396.18 temperature 30 720 < th dose independent rect. 11 2
784 396.19 temperature 25 270 > th dose dependent no NA NA
830 396.33 temperature 25 720 > th dose dependent rect. 3 6
832 396.34 radiation 1 43200 < th dose dependent rect. 20 9
848 396.51 humidity 70 270 > th dose independent rect. 10 13
883 396.69 temperature 25 720 > th dose dependent rect. 22 12
954 397.31 humidity 70 270 > th dose independent rect. 14 9
1000 397.72 radiation 1 270 > th dose dependent rect. 13 20