Os04g0508100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0508100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.82 | 0.261 | 12.1 | -0.539 | 0.555 | 0.476 | 0.49 | 0.0714 | -0.0371 | 12.1 | 20.5 | 879 | -- | -- |
| 30.83 | 0.259 | 12.1 | -0.553 | 0.554 | 0.469 | 0.471 | -- | -0.0403 | 12.1 | 20.55 | 890 | -- | -- |
| 31.76 | 0.262 | 12.1 | -0.541 | 0.556 | 0.46 | -- | -0.0669 | -0.0438 | 11.9 | 20.6 | 886 | -- | -- |
| 31.78 | 0.263 | 12.1 | -0.537 | 0.554 | 0.472 | -- | -- | -0.0432 | 12 | 20.64 | 902 | -- | -- |
| 46.21 | 0.318 | 12.1 | -0.42 | -- | 0.386 | -- | 0.24 | -0.00155 | -- | 20.5 | 1590 | -- | -- |
| 36.87 | 0.285 | 12.1 | -0.375 | 0.489 | -- | 0.527 | -- | 0.0645 | 12.3 | -- | -- | -- | -- |
| 38.05 | 0.289 | 12.1 | -0.355 | 0.487 | -- | -- | -- | 0.0667 | 12.2 | -- | -- | -- | -- |
| 46.52 | 0.319 | 12.1 | -0.464 | -- | 0.374 | -- | -- | -0.0112 | -- | 20.5 | 1590 | -- | -- |
| 38.43 | 0.289 | 12.1 | -- | 0.543 | 0.302 | -- | -- | 0.0353 | 12 | 20.6 | 864 | -- | -- |
| 53.01 | 0.34 | 12.1 | -0.37 | -- | -- | -- | -- | 0.0594 | -- | -- | -- | -- | -- |
| 41.37 | 0.301 | 12 | -- | 0.492 | -- | -- | -- | 0.106 | 12.2 | -- | -- | -- | -- |
| 48.43 | 0.324 | 12.1 | -- | -- | 0.297 | -- | -- | 0.0664 | -- | 27 | 18 | -- | -- |
| 56.62 | 0.351 | 12.1 | -- | -- | -- | -- | -- | 0.101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.13 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 7 |
| 5 | 28.49 | temperature | 20 | 10 | > th | dose dependent | sin | 4 | NA |
| 6 | 28.49 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 22 | 28.75 | temperature | 30 | 30 | < th | dose dependent | rect. | 2 | 17 |
| 27 | 28.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 37 | 28.88 | temperature | 30 | 90 | < th | dose dependent | rect. | 2 | 15 |
| 38 | 28.89 | temperature | 30 | 30 | < th | dose dependent | sin | 4 | NA |
| 45 | 28.92 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 17 |
| 49 | 28.94 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 151 | 29.67 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 16 |
| 154 | 29.67 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 15 |
| 174 | 29.74 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 190 | 29.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 19 |
| 251 | 30.09 | temperature | 10 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 290 | 30.20 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 13 |
| 300 | 30.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 10 |
| 302 | 30.25 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 6 |
| 304 | 30.25 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 17 |
| 323 | 30.29 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 9 |
| 333 | 30.32 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 18 |
| 365 | 30.39 | radiation | 10 | 43200 | < th | dose dependent | rect. | 20 | 7 |
| 418 | 30.51 | temperature | 10 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 446 | 30.59 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 494 | 30.67 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 545 | 30.76 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 21 |
| 637 | 30.91 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 705 | 31.00 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 722 | 31.02 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 17 |
| 736 | 31.04 | temperature | 15 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 738 | 31.05 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 744 | 31.06 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 800 | 31.12 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 22 |
| 832 | 31.15 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 20 |
| 850 | 31.17 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 911 | 31.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 913 | 31.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 6 |
| 914 | 31.23 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 9 |
| 963 | 31.27 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 14 |