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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0508000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF231, plant domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.018) R2 : 0.0016
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0324 (0.0379) R2dN8 : 0.00207 R2N8 : 0.0016
σ : 0.339
deviance : 52.83
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
49.32 0.33 2.85 0.202 0.114 -3.59 -0.163 16.9 -0.0206 5.6 0.5161 197 -- --
52.01 0.338 2.89 0.0782 0.0971 -0.0929 -0.271 -- -0.0273 5.8 -0.759 59 -- --
48.44 0.324 2.85 0.186 0.119 -3.77 -- 18.1 -0.0317 5.41 2.02 220 -- --
52.13 0.336 2.89 0.0782 0.0982 -0.124 -- -- -0.0271 4.67 -1.7 26 -- --
49.03 0.326 2.84 0.248 -- -4.92 -- 22.5 -0.0193 -- 2.017 178 -- --
52.02 0.338 2.89 0.077 0.0964 -- -0.275 -- -0.0271 5.82 -- -- -- --
52.16 0.338 2.89 0.0743 0.0985 -- -- -- -0.0263 4.74 -- -- -- --
52.64 0.338 2.89 0.0823 -- -0.126 -- -- -0.0245 -- -1.674 26 -- --
52.29 0.337 2.89 -- 0.0996 -0.0898 -- -- -0.0355 4.66 -1.568 26 -- --
52.67 0.339 2.89 0.078 -- -- -- -- -0.0238 -- -- -- -- --
52.3 0.338 2.89 -- 0.0999 -- -- -- -0.0346 4.72 -- -- -- --
52.81 0.338 2.89 -- -- -0.101 -- -- -0.0333 -- -1.497 34 -- --
52.83 0.339 2.89 -- -- -- -- -- -0.0324 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 44.12 precipitation 0.1 90 > th dose independent rect. 21 1
5 44.12 precipitation 0.1 90 > th dose dependent rect. 21 1
9 44.86 wind 1.0 270 < th dose dependent rect. 2 1
10 45.60 wind 1.0 270 < th dose independent rect. 2 1
13 46.77 temperature 25.0 30 > th dose independent rect. 21 1
19 47.54 humidity 90.0 90 > th dose dependent rect. 20 1
21 47.87 temperature 20.0 10 > th dose dependent rect. 5 1
28 48.29 wind 1.0 270 < th dose independent rect. 18 1
29 48.29 precipitation 0.1 270 > th dose independent rect. 18 1
30 48.29 wind 1.0 270 < th dose dependent rect. 18 1
31 48.29 precipitation 0.1 270 > th dose dependent rect. 18 1
36 48.41 precipitation 0.1 270 > th dose independent rect. 18 6
37 48.41 precipitation 0.1 270 > th dose dependent rect. 18 6
42 48.43 precipitation 0.1 270 > th dose independent rect. 18 4
56 48.49 wind 1.0 270 < th dose dependent rect. 16 11
72 48.58 wind 1.0 270 < th dose dependent rect. 20 7
79 48.60 wind 1.0 270 < th dose dependent rect. 16 3
112 48.73 humidity 90.0 270 > th dose dependent rect. 18 1
114 48.79 humidity 90.0 270 > th dose dependent rect. 18 3
124 48.90 humidity 90.0 10 > th dose dependent rect. 22 1
136 49.09 wind 1.0 270 < th dose independent rect. 16 11
142 49.11 temperature 20.0 30 > th dose independent rect. 4 2
146 49.13 atmosphere 1005.0 30 > th dose independent rect. 4 2
158 49.20 radiation 10.0 10 < th dose independent rect. 4 2
163 49.22 wind 7.0 4320 > th dose independent rect. 1 1
168 49.22 wind 7.0 4320 > th dose dependent rect. 1 1
188 49.31 wind 1.0 270 < th dose independent rect. 20 7
192 49.31 humidity 90.0 270 > th dose dependent rect. 10 11
254 49.54 wind 1.0 270 < th dose dependent sin 15 NA
262 49.58 precipitation 0.1 270 > th dose dependent rect. 18 17
265 49.59 radiation 1.0 30 > th dose independent rect. 5 1
321 49.78 wind 1.0 720 > th dose independent rect. 20 7
323 49.78 wind 1.0 720 < th dose dependent rect. 21 2
359 49.89 wind 1.0 720 > th dose independent rect. 13 14
374 49.92 wind 1.0 720 > th dose independent rect. 11 16
377 49.92 radiation 10.0 10 < th dose dependent rect. 4 2
380 49.93 wind 3.0 30 < th dose independent rect. 4 2
388 49.96 wind 9.0 4320 > th dose independent rect. 19 1
391 49.96 wind 9.0 4320 > th dose dependent rect. 19 1
394 49.96 wind 1.0 720 < th dose dependent rect. 17 6
410 50.00 humidity 90.0 10 > th dose independent rect. 22 1
425 50.04 wind 1.0 30 > th dose independent rect. 4 2
426 50.04 humidity 80.0 10 > th dose independent rect. 4 2
449 50.09 wind 1.0 720 < th dose independent rect. 22 1
455 50.10 wind 1.0 270 > th dose independent sin 16 NA
457 50.10 precipitation 0.1 270 > th dose dependent sin 15 NA
478 50.12 atmosphere 995.0 30 > th dose dependent rect. 4 2
483 50.13 wind 1.0 270 < th dose independent sin 15 NA
518 50.17 wind 1.0 720 < th dose independent rect. 17 6
550 50.19 temperature 20.0 10 > th dose dependent rect. 21 1
566 50.22 humidity 90.0 90 > th dose independent rect. 20 1
574 50.22 wind 7.0 10 < th dose dependent rect. 4 2
588 50.23 wind 9.0 30 < th dose independent rect. 6 22
589 50.23 atmosphere 995.0 30 > th dose independent rect. 6 22
590 50.23 precipitation 0.1 30 < th dose independent rect. 6 22
598 50.23 precipitation 0.1 30 < th dose dependent rect. 6 22
600 50.24 precipitation 0.1 30 < th dose independent rect. 4 2
607 50.24 precipitation 0.1 30 < th dose dependent rect. 4 2
626 50.25 temperature 10.0 30 > th dose independent rect. 4 2
628 50.25 temperature 30.0 30 < th dose independent rect. 4 2
629 50.25 humidity 50.0 30 > th dose independent rect. 4 2
634 50.25 atmosphere 1010.0 30 < th dose independent rect. 4 2
644 50.25 temperature 10.0 30 > th dose independent rect. 6 22
659 50.26 humidity 90.0 270 > th dose independent rect. 18 1
667 50.26 humidity 50.0 30 > th dose dependent rect. 4 2
706 50.27 humidity 80.0 90 > th dose dependent rect. 4 1
725 50.29 temperature 20.0 270 > th dose dependent rect. 2 1
858 50.38 precipitation 0.1 270 > th dose independent rect. 18 17
901 50.41 temperature 10.0 30 > th dose dependent rect. 6 22
902 50.42 precipitation 0.1 270 > th dose independent sin 16 NA
904 50.42 precipitation 0.1 270 < th dose independent sin 16 NA
913 50.42 precipitation 0.1 270 < th dose dependent sin 16 NA
999 50.47 wind 1.0 30 > th dose independent rect. 6 22