Os04g0507900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os04g0507900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.4 | 0.272 | 9.24 | -0.129 | 0.373 | -0.916 | -0.314 | 0.35 | -0.109 | 22.1 | 85 | 1258 | -- | -- |
| 33.53 | 0.27 | 9.25 | -0.127 | 0.393 | -0.9 | -0.247 | -- | -0.117 | 22.1 | 85.51 | 1221 | -- | -- |
| 33.74 | 0.271 | 9.25 | -0.142 | 0.404 | -0.908 | -- | 0.183 | -0.117 | 22.1 | 85.17 | 1221 | -- | -- |
| 33.77 | 0.271 | 9.24 | -0.151 | 0.426 | -0.921 | -- | -- | -0.108 | 22.1 | 85.76 | 1196 | -- | -- |
| 39.31 | 0.292 | 9.23 | -0.126 | -- | -0.843 | -- | 0.184 | -0.0946 | -- | 86 | 1437 | -- | -- |
| 51.01 | 0.335 | 9.24 | -0.278 | 0.297 | -- | -0.361 | -- | -0.1 | 20.8 | -- | -- | -- | -- |
| 51.42 | 0.336 | 9.24 | -0.265 | 0.301 | -- | -- | -- | -0.0997 | 20.5 | -- | -- | -- | -- |
| 39.42 | 0.292 | 9.23 | -0.163 | -- | -0.828 | -- | -- | -0.113 | -- | 86 | 1436 | -- | -- |
| 34.32 | 0.273 | 9.24 | -- | 0.427 | -0.94 | -- | -- | -0.0973 | 22.1 | 85 | 1196 | -- | -- |
| 56.49 | 0.351 | 9.23 | -0.267 | -- | -- | -- | -- | -0.103 | -- | -- | -- | -- | -- |
| 53.28 | 0.341 | 9.23 | -- | 0.302 | -- | -- | -- | -0.0701 | 20.5 | -- | -- | -- | -- |
| 40.09 | 0.295 | 9.23 | -- | -- | -0.849 | -- | -- | -0.102 | -- | 85 | 1432 | -- | -- |
| 58.37 | 0.357 | 9.22 | -- | -- | -- | -- | -- | -0.073 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.93 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 5 | 33.09 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 15 |
| 17 | 33.28 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 26 | 33.40 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 32 | 33.46 | humidity | 50 | 1440 | > th | dose dependent | rect. | 6 | 16 |
| 46 | 33.60 | humidity | 80 | 1440 | > th | dose independent | sin | 0 | NA |
| 97 | 33.81 | humidity | 90 | 1440 | < th | dose dependent | rect. | 7 | 15 |
| 147 | 33.94 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 166 | 33.98 | humidity | 50 | 1440 | > th | dose dependent | sin | 22 | NA |
| 271 | 34.22 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 303 | 34.29 | humidity | 90 | 1440 | < th | dose dependent | rect. | 16 | 22 |
| 327 | 34.33 | humidity | 90 | 1440 | < th | dose dependent | sin | 22 | NA |
| 460 | 34.52 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 471 | 34.55 | humidity | 90 | 1440 | < th | dose dependent | no | NA | NA |
| 518 | 34.62 | humidity | 70 | 1440 | > th | dose dependent | rect. | 7 | 8 |
| 544 | 34.67 | humidity | 90 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 565 | 34.71 | humidity | 80 | 1440 | < th | dose independent | rect. | 17 | 22 |
| 581 | 34.72 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 596 | 34.75 | humidity | 80 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 625 | 34.79 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |
| 658 | 34.85 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 666 | 34.86 | humidity | 80 | 1440 | < th | dose dependent | sin | 13 | NA |
| 674 | 34.87 | humidity | 50 | 1440 | > th | dose dependent | rect. | 16 | 5 |
| 696 | 34.89 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 700 | 34.90 | humidity | 80 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 705 | 34.90 | humidity | 90 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 719 | 34.92 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 768 | 34.98 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 9 |
| 793 | 35.01 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 812 | 35.04 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 820 | 35.04 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 10 |
| 990 | 35.19 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 9 |