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Os04g0506100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Receptor-like protein kinase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.07 (0.0208) R2 : 0.773
β1 : 1.1 (0.0762) R2dD : 0.108 R2D : 0.13
β2 : 1.88 (0.0525) R2dC : 0.638 R2C : 0.644
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.168 (0.0444) R2dN8 : 0.00953 R2N8 : 0.0142
σ : 0.391
deviance : 69.82
__
_____
C
peak time of C : 3.65
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
60.74 0.366 7.97 1.69 1.82 -0.0205 0.227 3.79 -0.0682 3.7 29.27 1263 -- --
61.48 0.365 8.05 1.05 1.83 0.422 0.303 -- -0.0731 3.63 31.41 1255 -- --
60.9 0.363 7.97 1.7 1.82 -0.0209 -- 3.82 -0.0664 3.7 29.21 1263 -- --
61.48 0.365 8.05 0.999 1.83 0.413 -- -- -0.0902 3.71 31.65 1262 -- --
230.52 0.711 8.02 1.76 -- -2.28 -- 8.16 -0.0854 -- 28.5 1231 -- --
69.4 0.391 8.06 1.11 1.87 -- 0.37 -- -0.166 3.65 -- -- -- --
69.82 0.391 8.07 1.1 1.88 -- -- -- -0.168 3.65 -- -- -- --
205.2 0.67 8.01 1.55 -- -2.05 -- -- 0.158 -- -7.347 47520 -- --
87.51 0.436 8.05 -- 1.83 0.621 -- -- -0.122 3.74 29.7 2679 -- --
265.42 0.761 8.07 1.18 -- -- -- -- -0.118 -- -- -- -- --
101.79 0.472 8.09 -- 1.9 -- -- -- -0.29 3.64 -- -- -- --
251.39 0.741 8.07 -- -- -1.4 -- -- -0.115 -- 24 2654 -- --
302.14 0.811 8.1 -- -- -- -- -- -0.249 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 54.68 temperature 15.0 270 > th dose independent rect. 19 19
5 55.64 temperature 15.0 270 > th dose independent rect. 9 15
6 55.66 temperature 20.0 30 > th dose independent rect. 6 10
8 55.80 wind 9.0 10 < th dose independent rect. 6 10
10 55.96 wind 7.0 43200 > th dose dependent sin 6 NA
11 55.98 temperature 15.0 270 > th dose independent rect. 19 5
12 56.01 temperature 15.0 90 > th dose independent rect. 21 18
14 56.07 wind 9.0 43200 < th dose independent sin 7 NA
16 56.13 wind 7.0 43200 > th dose dependent rect. 21 17
17 56.14 temperature 10.0 270 > th dose dependent rect. 19 18
18 56.15 wind 9.0 43200 > th dose independent rect. 18 19
21 56.19 precipitation 0.1 10 < th dose independent rect. 16 14
22 56.19 precipitation 0.1 10 < th dose dependent rect. 16 14
24 56.21 humidity 50.0 270 > th dose independent rect. 17 22
26 56.23 wind 9.0 43200 > th dose independent sin 7 NA
27 56.24 wind 9.0 43200 > th dose independent rect. 20 17
30 56.25 wind 9.0 43200 < th dose independent rect. 18 19
31 56.26 radiation 30.0 10 < th dose independent rect. 16 14
33 56.27 temperature 10.0 10 > th dose independent rect. 6 10
35 56.27 atmosphere 1015.0 10 < th dose independent rect. 6 10
36 56.27 temperature 10.0 10 > th dose independent rect. 16 14
41 56.34 precipitation 0.1 10 < th dose independent rect. 6 10
42 56.34 precipitation 0.1 10 < th dose dependent rect. 6 10
47 56.36 atmosphere 995.0 10 > th dose independent rect. 16 14
52 56.39 temperature 15.0 270 > th dose independent rect. 5 9
57 56.41 wind 9.0 43200 > th dose independent rect. 8 5
61 56.46 humidity 50.0 270 > th dose independent rect. 19 19
64 56.47 wind 9.0 43200 > th dose independent rect. 9 3
65 56.47 atmosphere 995.0 10 > th dose independent rect. 6 10
72 56.50 wind 9.0 10 < th dose independent rect. 16 14
77 56.56 wind 9.0 43200 < th dose independent rect. 5 8
80 56.57 wind 9.0 270 < th dose independent rect. 18 21
82 56.58 wind 7.0 43200 > th dose dependent rect. 6 7
86 56.59 wind 9.0 270 < th dose independent rect. 19 19
91 56.63 wind 7.0 43200 > th dose independent rect. 2 12
96 56.64 wind 7.0 43200 > th dose independent rect. 23 15
108 56.68 temperature 10.0 270 > th dose dependent rect. 19 5
109 56.68 radiation 40.0 10 < th dose dependent rect. 16 14
111 56.69 wind 9.0 43200 < th dose independent rect. 9 3
112 56.69 wind 9.0 270 < th dose independent rect. 15 3
120 56.71 wind 9.0 43200 < th dose independent rect. 8 5
126 56.72 radiation 40.0 270 < th dose independent rect. 15 2
128 56.72 wind 7.0 43200 < th dose independent rect. 23 16
130 56.73 wind 1.0 270 > th dose independent rect. 14 5
131 56.73 wind 9.0 270 < th dose independent rect. 14 5
136 56.74 precipitation 0.1 270 < th dose independent rect. 15 3
142 56.74 precipitation 0.1 270 < th dose dependent rect. 15 3
147 56.75 precipitation 0.1 270 < th dose independent rect. 14 5
155 56.75 precipitation 0.1 270 < th dose dependent rect. 14 5
169 56.77 wind 7.0 43200 > th dose dependent rect. 9 3
174 56.78 precipitation 0.1 270 < th dose independent rect. 14 15
175 56.78 precipitation 0.1 270 < th dose dependent rect. 14 15
187 56.81 wind 9.0 270 < th dose independent rect. 5 9
202 56.83 radiation 30.0 43200 < th dose independent rect. 17 4
216 56.87 wind 1.0 270 > th dose independent rect. 15 3
217 56.87 temperature 10.0 270 > th dose independent rect. 14 5
219 56.87 atmosphere 1010.0 270 < th dose independent rect. 14 5
222 56.87 atmosphere 995.0 270 > th dose independent rect. 19 19
231 56.90 temperature 10.0 270 > th dose independent rect. 15 3
233 56.90 atmosphere 1010.0 270 < th dose independent rect. 15 3
256 56.93 wind 1.0 10 > th dose independent rect. 6 10
278 57.00 wind 9.0 270 < th dose independent rect. 14 15
281 57.00 temperature 15.0 10 > th dose independent rect. 20 20
305 57.08 atmosphere 995.0 270 > th dose independent rect. 18 21
317 57.11 atmosphere 995.0 270 > th dose independent rect. 5 9
318 57.11 atmosphere 1015.0 270 < th dose independent rect. 5 9
319 57.11 temperature 10.0 270 > th dose independent rect. 14 15
330 57.13 precipitation 0.1 270 < th dose independent rect. 5 9
332 57.13 precipitation 0.1 270 < th dose dependent rect. 5 9
346 57.16 humidity 50.0 270 > th dose independent rect. 5 9
364 57.18 temperature 10.0 10 > th dose dependent rect. 6 10
381 57.22 precipitation 0.1 270 < th dose independent rect. 24 19
384 57.22 wind 9.0 43200 < th dose independent rect. 14 23
386 57.22 precipitation 0.1 270 < th dose dependent rect. 24 19
390 57.24 humidity 50.0 270 > th dose independent rect. 9 15
391 57.24 radiation 40.0 270 < th dose independent rect. 14 15
397 57.25 atmosphere 995.0 270 > th dose independent rect. 15 2
400 57.25 precipitation 0.1 90 < th dose independent rect. 3 16
401 57.25 precipitation 0.1 90 < th dose dependent rect. 3 16
403 57.26 precipitation 0.1 270 < th dose independent rect. 24 10
405 57.26 wind 9.0 43200 > th dose independent rect. 14 23
408 57.26 precipitation 0.1 270 < th dose dependent rect. 24 10
427 57.29 precipitation 0.1 270 < th dose independent rect. 19 19
430 57.29 precipitation 0.1 270 < th dose dependent rect. 19 19
431 57.30 atmosphere 995.0 270 > th dose independent rect. 14 5
504 57.43 wind 7.0 270 < th dose independent rect. 24 9
509 57.43 temperature 10.0 10 > th dose dependent rect. 20 20
514 57.44 precipitation 0.1 270 < th dose independent rect. 18 21
518 57.44 precipitation 0.1 270 < th dose dependent rect. 18 21
553 57.48 atmosphere 995.0 270 > th dose dependent rect. 15 2
589 57.54 temperature 10.0 270 > th dose dependent rect. 15 3
614 57.57 wind 9.0 10 < th dose independent rect. 20 20
737 57.74 temperature 30.0 270 < th dose independent rect. 19 5
738 57.74 humidity 50.0 270 > th dose independent rect. 19 5
739 57.74 atmosphere 995.0 270 > th dose independent rect. 19 5
740 57.74 radiation 1.0 270 < th dose independent rect. 19 5
749 57.74 temperature 10.0 270 > th dose independent rect. 24 19
750 57.74 atmosphere 1015.0 270 < th dose independent rect. 24 19
753 57.74 radiation 1.0 270 < th dose dependent rect. 19 5
783 57.77 temperature 10.0 270 > th dose dependent rect. 14 5
809 57.78 wind 9.0 43200 > th dose dependent rect. 8 22
811 57.79 temperature 10.0 270 > th dose independent rect. 24 10
812 57.79 atmosphere 995.0 270 > th dose independent rect. 24 10
818 57.79 wind 9.0 43200 > th dose dependent rect. 10 23
820 57.80 wind 9.0 270 < th dose independent rect. 19 5
822 57.80 atmosphere 1015.0 270 < th dose independent rect. 24 10
823 57.80 wind 9.0 270 < th dose independent rect. 10 14
824 57.80 atmosphere 1015.0 10 < th dose independent rect. 16 14
826 57.80 wind 3.0 43200 > th dose dependent sin 10 NA
853 57.82 wind 9.0 43200 > th dose dependent no NA NA
854 57.82 wind 9.0 43200 > th dose dependent rect. 1 23
855 57.82 wind 9.0 43200 > th dose dependent rect. 3 23
867 57.83 wind 9.0 43200 > th dose dependent rect. 3 21
884 57.85 precipitation 0.1 270 < th dose independent rect. 19 5
890 57.85 radiation 1.0 10 > th dose independent rect. 6 10
893 57.85 precipitation 0.1 270 < th dose dependent rect. 19 5
899 57.86 wind 9.0 90 < th dose independent rect. 21 18
907 57.87 humidity 50.0 270 > th dose independent rect. 24 9
948 57.89 wind 9.0 43200 > th dose dependent rect. 8 10
958 57.91 humidity 50.0 30 > th dose independent rect. 6 10
983 57.94 wind 9.0 43200 < th dose independent rect. 1 23