Os04g0505400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF247, plant family protein.
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Os04g0505400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF247, plant family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 322.69 | 0.844 | 5.03 | -4.17 | 0.995 | 1.59 | -1.38 | -10.3 | 0.0307 | 8.69 | 24.86 | 4556 | -- | -- |
| 347.31 | 0.868 | 4.79 | -2.02 | 0.94 | 1.22 | -1.52 | -- | 0.308 | 8.78 | -1.987 | 7293 | -- | -- |
| 328.96 | 0.845 | 5.03 | -4.2 | 1 | 1.59 | -- | -10.2 | 0.0281 | 8.69 | 24.8 | 4540 | -- | -- |
| 352.18 | 0.88 | 4.75 | -1.75 | 1.03 | 1.62 | -- | -- | 0.41 | 6.92 | -0.9652 | 7243 | -- | -- |
| 385.02 | 0.914 | 5.04 | -4.08 | -- | 1.49 | -- | -9.72 | 0.0507 | -- | 24.6 | 4515 | -- | -- |
| 370.65 | 0.903 | 4.7 | -1.39 | 0.96 | -- | -1.43 | -- | 0.637 | 8.71 | -- | -- | -- | -- |
| 377.39 | 0.91 | 4.7 | -1.44 | 0.964 | -- | -- | -- | 0.637 | 8.7 | -- | -- | -- | -- |
| 405.77 | 0.942 | 4.76 | -1.67 | -- | 1.29 | -- | -- | 0.473 | -- | -0.9652 | 7243 | -- | -- |
| 425.75 | 0.966 | 4.68 | -- | 0.955 | 0.773 | -- | -- | 0.706 | 7.94 | -0.9652 | 7243 | -- | -- |
| 429.89 | 0.969 | 4.72 | -1.44 | -- | -- | -- | -- | 0.645 | -- | -- | -- | -- | -- |
| 432.1 | 0.972 | 4.66 | -- | 0.96 | -- | -- | -- | 0.797 | 8.81 | -- | -- | -- | -- |
| 475.46 | 1.02 | 4.71 | -- | -- | 0.768 | -- | -- | 0.718 | -- | -0.9652 | 7243 | -- | -- |
| 484.48 | 1.03 | 4.69 | -- | -- | -- | -- | -- | 0.805 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 296.01 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 2 | 296.04 | radiation | 10 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 3 | 296.35 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 4 | 296.78 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 7 | 297.81 | humidity | 80 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 9 | 298.29 | radiation | 40 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 27 | 299.01 | radiation | 20 | 43200 | > th | dose independent | rect. | 7 | 5 |
| 28 | 299.03 | radiation | 20 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 43 | 299.13 | wind | 3 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 44 | 299.15 | radiation | 20 | 43200 | > th | dose independent | sin | 8 | NA |
| 64 | 299.44 | radiation | 40 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 84 | 299.75 | radiation | 1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 121 | 299.90 | wind | 9 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 149 | 300.82 | radiation | 30 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 153 | 300.89 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 155 | 300.94 | humidity | 90 | 43200 | < th | dose independent | rect. | 12 | 3 |
| 190 | 301.07 | radiation | 30 | 43200 | < th | dose dependent | rect. | 7 | 7 |
| 191 | 301.11 | radiation | 10 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 223 | 301.44 | radiation | 10 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 239 | 301.66 | humidity | 90 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 240 | 301.66 | radiation | 40 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 246 | 301.79 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 260 | 301.94 | radiation | 10 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 294 | 302.07 | radiation | 30 | 43200 | < th | dose dependent | rect. | 23 | 15 |
| 331 | 302.25 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 387 | 302.41 | radiation | 40 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 390 | 302.42 | radiation | 1 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 395 | 302.44 | radiation | 20 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 413 | 302.60 | radiation | 1 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 417 | 302.63 | radiation | 40 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 426 | 302.67 | radiation | 40 | 43200 | > th | dose independent | rect. | 11 | 23 |
| 429 | 302.69 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 453 | 302.80 | radiation | 20 | 43200 | > th | dose independent | rect. | 11 | 23 |
| 496 | 302.85 | radiation | 30 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 514 | 302.87 | radiation | 20 | 43200 | > th | dose independent | no | NA | NA |
| 626 | 302.89 | radiation | 40 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 640 | 302.94 | radiation | 30 | 43200 | < th | dose dependent | sin | 5 | NA |
| 643 | 302.96 | radiation | 40 | 43200 | > th | dose independent | sin | 3 | NA |
| 652 | 302.98 | radiation | 40 | 43200 | > th | dose independent | sin | 11 | NA |
| 698 | 303.04 | radiation | 40 | 43200 | > th | dose independent | no | NA | NA |
| 849 | 303.13 | radiation | 1 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 890 | 303.26 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 930 | 303.36 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 4 |
| 947 | 303.46 | radiation | 1 | 43200 | > th | dose dependent | rect. | 11 | 1 |