Os04g0505200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, plant specific containing protein.
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Os04g0505200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, plant specific containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 406.06 | 0.947 | 5.45 | -0.958 | 2.02 | -1.71 | -1.98 | 26.9 | -0.161 | 22.8 | 30.79 | 3906 | -- | -- |
| 459.52 | 0.998 | 6.25 | -6.58 | 2.07 | 1.89 | -2.27 | -- | -1.45 | 23.1 | 24.4 | 47520 | -- | -- |
| 421.38 | 0.956 | 5.45 | -0.969 | 2.04 | -1.69 | -- | 27.2 | -0.148 | 23 | 31 | 3539 | -- | -- |
| 470.17 | 1.01 | 6.19 | -6.62 | 2.06 | 1.92 | -- | -- | -1.35 | 23.1 | 24.2 | 47520 | -- | -- |
| 672.88 | 1.21 | 5.39 | -1.02 | -- | -1.42 | -- | 27.4 | -0.079 | -- | 31.48 | 3714 | -- | -- |
| 517.58 | 1.07 | 5.98 | -4.64 | 2.1 | -- | -1.73 | -- | -0.389 | 23 | -- | -- | -- | -- |
| 530.07 | 1.08 | 5.98 | -4.58 | 2.11 | -- | -- | -- | -0.384 | 23.1 | -- | -- | -- | -- |
| 732.54 | 1.26 | 6.16 | -6.64 | -- | 2.04 | -- | -- | -1.39 | -- | 25.23 | 47520 | -- | -- |
| 756.35 | 1.28 | 5.78 | -- | 2.14 | -2.93 | -- | -- | 0.63 | 22.5 | 18.2 | 47520 | -- | -- |
| 807.57 | 1.33 | 5.93 | -4.53 | -- | -- | -- | -- | -0.367 | -- | -- | -- | -- | -- |
| 1082.08 | 1.54 | 5.86 | -- | 2.07 | -- | -- | -- | 0.125 | 23 | -- | -- | -- | -- |
| 1030.76 | 1.5 | 5.66 | -- | -- | -2.84 | -- | -- | 0.807 | -- | 18.33 | 47520 | -- | -- |
| 1348.1 | 1.71 | 5.81 | -- | -- | -- | -- | -- | 0.136 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 392.68 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 2 | 392.93 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 7 |
| 4 | 393.25 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 5 | 393.28 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 10 | 393.96 | temperature | 30 | 14400 | < th | dose independent | rect. | 22 | 11 |
| 24 | 398.44 | temperature | 30 | 14400 | > th | dose dependent | rect. | 18 | 16 |
| 32 | 398.91 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 60 | 400.89 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 2 |
| 78 | 404.09 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 98 | 406.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 99 | 407.22 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 114 | 407.47 | temperature | 30 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 116 | 407.54 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 151 | 408.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 17 |
| 157 | 408.93 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 17 |
| 159 | 408.99 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 20 |
| 169 | 409.29 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 6 |
| 174 | 409.37 | temperature | 30 | 4320 | > th | dose independent | rect. | 18 | 19 |
| 181 | 409.48 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 8 |
| 302 | 411.05 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 19 |
| 310 | 411.36 | temperature | 30 | 4320 | > th | dose independent | sin | 9 | NA |
| 312 | 411.38 | temperature | 30 | 1440 | > th | dose dependent | rect. | 8 | 5 |
| 345 | 411.63 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 352 | 411.85 | temperature | 30 | 4320 | < th | dose independent | sin | 9 | NA |
| 411 | 412.95 | temperature | 30 | 4320 | > th | dose dependent | sin | 7 | NA |
| 431 | 413.06 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 458 | 413.52 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 460 | 413.64 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 608 | 414.76 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 623 | 414.80 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 778 | 415.24 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 791 | 415.34 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 867 | 415.85 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 872 | 415.89 | temperature | 30 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 890 | 415.91 | temperature | 25 | 14400 | > th | dose dependent | rect. | 21 | 1 |