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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0503600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.0198) R2 : 0.638
β1 : -0.98 (0.0821) R2dD : 0.155 R2D : 0.0286
β2 : 1.02 (0.0468) R2dC : 0.377 R2C : 0.399
β3 : -1.27 (0.103) R2dE : 0.169 R2E : 0.0875
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.169 (0.0447) R2dN8 : 0.0123 R2N8 : 0.0483
σ : 0.365
deviance : 61.28
__
_____
C
peak time of C : 22.7
E
wheather : temperature
threshold : 18.6
memory length : 2020
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
59.15 0.361 11.6 -1.12 1.02 -0.849 -0.297 1.32 0.112 22.7 19.2 1978 -- --
61.8 0.366 11.6 -0.941 1.03 -1.09 -0.288 -- 0.17 22.7 19 1982 -- --
59.52 0.359 11.6 -1.11 1.03 -0.835 -- 1.36 0.115 22.7 19.2 1979 -- --
61.28 0.365 11.6 -0.98 1.02 -1.27 -- -- 0.169 22.7 18.6 2020 -- --
121.51 0.513 11.6 -1.12 -- -0.993 -- 0.953 0.076 -- 19.17 2274 -- --
81.68 0.424 11.5 -0.497 1.05 -- -0.314 -- 0.349 22.7 -- -- -- --
82.09 0.424 11.5 -0.485 1.05 -- -- -- 0.35 22.7 -- -- -- --
121.11 0.513 11.5 -1.08 -- -1.46 -- -- 0.11 -- 18.34 2254 -- --
79.9 0.416 11.5 -- 1.03 -0.94 -- -- 0.329 22.6 17.95 1907 -- --
150.46 0.573 11.5 -0.464 -- -- -- -- 0.356 -- -- -- -- --
88.28 0.44 11.5 -- 1.05 -- -- -- 0.404 22.7 -- -- -- --
138.04 0.547 11.5 -- -- -0.861 -- -- 0.283 -- 19.42 779 -- --
156.15 0.583 11.5 -- -- -- -- -- 0.407 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 58.91 temperature 20 1440 > th dose independent rect. 6 1
2 58.92 humidity 80 14400 > th dose dependent rect. 5 1
5 59.68 wind 1 14400 > th dose independent rect. 24 2
6 59.69 temperature 20 1440 < th dose independent rect. 6 1
8 59.90 temperature 20 1440 < th dose independent rect. 5 3
11 60.09 temperature 20 1440 > th dose independent rect. 5 4
13 60.25 humidity 50 14400 > th dose dependent rect. 5 1
21 60.67 wind 1 14400 < th dose independent rect. 24 2
22 60.73 humidity 90 14400 > th dose dependent rect. 3 13
27 60.86 humidity 90 14400 > th dose dependent rect. 4 10
35 60.99 temperature 20 1440 < th dose dependent rect. 3 3
37 61.03 temperature 20 1440 < th dose independent rect. 22 1
43 61.06 humidity 90 14400 > th dose independent rect. 5 2
46 61.10 wind 3 43200 > th dose independent rect. 6 1
47 61.11 wind 3 43200 < th dose independent rect. 6 1
50 61.14 temperature 20 1440 < th dose independent rect. 22 14
68 61.28 wind 3 43200 < th dose dependent rect. 6 1
73 61.30 humidity 90 14400 > th dose dependent sin 3 NA
74 61.31 temperature 20 1440 > th dose independent rect. 22 1
77 61.32 temperature 20 1440 > th dose independent rect. 21 3
87 61.34 temperature 20 1440 > th dose independent rect. 21 15
91 61.35 temperature 20 1440 > th dose independent rect. 20 5
124 61.49 temperature 20 1440 > th dose independent rect. 19 7
126 61.50 temperature 20 1440 < th dose independent sin 7 NA
178 61.65 wind 3 43200 < th dose dependent rect. 6 3
182 61.66 wind 9 43200 > th dose dependent rect. 9 10
192 61.69 wind 9 43200 > th dose dependent sin 20 NA
200 61.71 temperature 20 1440 > th dose independent sin 7 NA
210 61.72 atmosphere 995 43200 < th dose dependent rect. 11 22
232 61.76 wind 9 43200 > th dose dependent rect. 12 21
257 61.81 atmosphere 995 43200 < th dose independent rect. 24 15
263 61.82 wind 9 43200 > th dose dependent rect. 10 4
275 61.84 humidity 90 14400 < th dose independent rect. 6 1
286 61.84 atmosphere 995 43200 < th dose dependent rect. 10 19
309 61.88 humidity 50 14400 > th dose dependent rect. 2 5
312 61.89 wind 9 43200 > th dose independent rect. 8 6
318 61.90 wind 9 43200 < th dose dependent rect. 6 1
336 61.93 humidity 90 14400 > th dose independent rect. 24 15
341 61.94 wind 9 43200 > th dose independent rect. 15 23
377 62.00 wind 3 43200 < th dose dependent rect. 5 7
397 62.03 humidity 90 14400 > th dose independent rect. 2 12
401 62.03 atmosphere 995 43200 < th dose dependent rect. 11 15
431 62.07 wind 3 43200 < th dose dependent rect. 5 9
437 62.08 wind 9 43200 > th dose independent rect. 15 19
438 62.08 wind 1 43200 > th dose dependent rect. 6 1
459 62.11 humidity 90 14400 > th dose independent rect. 9 1
473 62.12 atmosphere 995 43200 < th dose independent sin 5 NA
474 62.12 wind 9 43200 < th dose independent rect. 7 7
475 62.12 wind 9 43200 > th dose independent rect. 20 18
502 62.15 wind 9 43200 > th dose independent sin 3 NA
518 62.16 atmosphere 995 43200 > th dose independent rect. 1 13
531 62.17 atmosphere 995 43200 > th dose independent rect. 2 11
547 62.18 radiation 30 4320 < th dose independent rect. 7 1
561 62.19 wind 9 43200 > th dose independent rect. 20 20
571 62.20 wind 9 43200 > th dose independent rect. 13 22
579 62.21 temperature 20 14400 > th dose independent rect. 20 1
601 62.22 temperature 20 14400 < th dose independent rect. 20 1
625 62.23 wind 9 43200 < th dose independent rect. 16 22
637 62.24 humidity 90 14400 > th dose independent sin 5 NA
653 62.24 wind 9 43200 > th dose dependent rect. 15 23
669 62.25 wind 9 43200 > th dose dependent rect. 20 23
672 62.26 radiation 30 4320 < th dose independent rect. 22 10
674 62.26 wind 9 43200 < th dose independent rect. 15 19
677 62.26 temperature 20 1440 < th dose independent rect. 5 23
689 62.27 wind 9 43200 > th dose independent rect. 23 19
693 62.27 wind 9 43200 > th dose dependent no NA NA
707 62.29 radiation 30 4320 < th dose independent rect. 2 6
709 62.29 radiation 30 4320 < th dose independent rect. 24 8
723 62.30 wind 9 43200 < th dose independent sin 3 NA
732 62.30 wind 7 43200 > th dose dependent rect. 15 20
741 62.31 radiation 30 4320 < th dose independent rect. 18 14
754 62.32 temperature 20 1440 > th dose independent rect. 5 23
769 62.33 atmosphere 995 43200 < th dose dependent no NA NA
772 62.33 atmosphere 995 43200 < th dose dependent rect. 21 21
793 62.34 wind 9 43200 > th dose dependent rect. 18 23
818 62.36 wind 9 43200 < th dose independent rect. 20 18
902 62.42 wind 9 43200 < th dose independent rect. 13 22
936 62.45 wind 3 43200 > th dose independent rect. 13 20
937 62.45 wind 9 43200 < th dose independent rect. 20 20
940 62.45 atmosphere 995 43200 < th dose dependent sin 17 NA
963 62.47 wind 3 43200 < th dose independent rect. 4 11
981 62.47 atmosphere 995 43200 < th dose dependent rect. 1 23