Os04g0502800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nodulin-like protein.
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Os04g0502800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nodulin-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.83 | 0.357 | 13.5 | 1.04 | 2.02 | 1.49 | 0.359 | 0.323 | 0.0325 | 4.83 | 23.61 | 773 | -- | -- |
| 57.9 | 0.354 | 13.5 | 1.09 | 2.03 | 1.47 | 0.348 | -- | 0.0352 | 4.84 | 23.4 | 805 | -- | -- |
| 57.96 | 0.355 | 13.5 | 1.03 | 2.03 | 1.58 | -- | 0.444 | 0.0162 | 4.84 | 23.01 | 809 | -- | -- |
| 58.21 | 0.355 | 13.5 | 1.09 | 2.03 | 1.48 | -- | -- | 0.0326 | 4.84 | 23.36 | 807 | -- | -- |
| 165.71 | 0.6 | 13.4 | 1.43 | -- | 2.92 | -- | 0.0556 | 0.323 | -- | 31.59 | 314 | -- | -- |
| 86.24 | 0.435 | 13.5 | 0.693 | 2.04 | -- | 0.394 | -- | -0.217 | 5.14 | -- | -- | -- | -- |
| 86.63 | 0.436 | 13.5 | 0.692 | 2.04 | -- | -- | -- | -0.218 | 5.15 | -- | -- | -- | -- |
| 165.66 | 0.599 | 13.4 | 1.42 | -- | 2.9 | -- | -- | 0.31 | -- | 31.7 | 314 | -- | -- |
| 85.56 | 0.431 | 13.5 | -- | 2.04 | 0.975 | -- | -- | -0.166 | 4.96 | 23.52 | 802 | -- | -- |
| 304.77 | 0.816 | 13.5 | 0.765 | -- | -- | -- | -- | -0.167 | -- | -- | -- | -- | -- |
| 99.27 | 0.466 | 13.5 | -- | 2.05 | -- | -- | -- | -0.296 | 5.14 | -- | -- | -- | -- |
| 214.24 | 0.682 | 13.5 | -- | -- | 2.52 | -- | -- | 0.0823 | -- | 32.82 | 294 | -- | -- |
| 320.19 | 0.835 | 13.6 | -- | -- | -- | -- | -- | -0.252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 5 | 51.32 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 13 |
| 15 | 51.66 | temperature | 25 | 720 | < th | dose dependent | sin | 4 | NA |
| 21 | 51.82 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 2 |
| 73 | 53.41 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 7 |
| 103 | 53.95 | temperature | 15 | 720 | > th | dose dependent | sin | 7 | NA |
| 112 | 54.07 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 13 |
| 121 | 54.23 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 11 |
| 238 | 55.82 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 7 |
| 261 | 56.03 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 16 |
| 269 | 56.09 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 4 |
| 277 | 56.15 | temperature | 20 | 720 | > th | dose independent | sin | 5 | NA |
| 278 | 56.15 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 13 |
| 298 | 56.37 | temperature | 20 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 317 | 56.51 | temperature | 20 | 720 | < th | dose independent | sin | 5 | NA |
| 356 | 56.81 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 14 |
| 376 | 56.92 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 11 |
| 390 | 57.01 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 504 | 57.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 5 |
| 524 | 57.69 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 978 | 59.61 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |