Os04g0499800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0499800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.42 | 0.405 | 8.39 | -1.94 | 0.419 | 1.21 | -0.545 | -1.61 | -0.259 | 11.8 | 21.5 | 2239 | -- | -- |
| 79.82 | 0.416 | 8.35 | -1.57 | 0.398 | 1.37 | -0.456 | -- | -0.192 | 11.6 | 21.4 | 2586 | -- | -- |
| 75.5 | 0.405 | 8.4 | -1.96 | 0.422 | 1.2 | -- | -1.59 | -0.273 | 11.6 | 21.7 | 2258 | -- | -- |
| 80.27 | 0.417 | 8.34 | -1.56 | 0.421 | 1.35 | -- | -- | -0.162 | 11.9 | 21.5 | 2493 | -- | -- |
| 85.74 | 0.431 | 8.41 | -2.03 | -- | 1.16 | -- | -1.62 | -0.29 | -- | 21.8 | 3003 | -- | -- |
| 129.92 | 0.534 | 8.24 | -0.877 | 0.319 | -- | -0.356 | -- | 0.25 | 11.8 | -- | -- | -- | -- |
| 130.46 | 0.535 | 8.25 | -0.891 | 0.321 | -- | -- | -- | 0.248 | 11.7 | -- | -- | -- | -- |
| 88 | 0.437 | 8.35 | -1.76 | -- | 1.83 | -- | -- | -0.127 | -- | 18.9 | 3227 | -- | -- |
| 135.94 | 0.543 | 8.25 | -- | 0.348 | 1.22 | -- | -- | 0.258 | 12.1 | 17.6 | 2098 | -- | -- |
| 136.94 | 0.547 | 8.25 | -0.9 | -- | -- | -- | -- | 0.244 | -- | -- | -- | -- | -- |
| 151.4 | 0.576 | 8.22 | -- | 0.332 | -- | -- | -- | 0.347 | 11.8 | -- | -- | -- | -- |
| 143.86 | 0.559 | 8.25 | -- | -- | 1.4 | -- | -- | 0.261 | -- | 17.57 | 1827 | -- | -- |
| 158.33 | 0.587 | 8.23 | -- | -- | -- | -- | -- | 0.344 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 17 | 74.73 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 57 | 75.28 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 137 | 76.30 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 5 |
| 141 | 76.34 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 10 |
| 212 | 76.69 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 5 |
| 236 | 76.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 315 | 77.03 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 367 | 77.21 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 368 | 77.21 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 436 | 77.44 | temperature | 10 | 1440 | > th | dose dependent | sin | 11 | NA |
| 444 | 77.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 473 | 77.57 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 595 | 78.09 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 653 | 78.33 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 785 | 78.91 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 789 | 78.94 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 854 | 79.21 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 934 | 79.55 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 958 | 79.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |