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Os04g0498800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cell division control protein 48 homolog B (AtCDC48b).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.76 (0.0185) R2 : 0.000175
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.011 (0.039) R2dN8 : 0.000226 R2N8 : 0.000175
σ : 0.349
deviance : 55.96
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
27.25 0.245 9.79 0.311 0.514 0.365 -0.108 0.855 -0.0298 15.7 30.5 2597 -- --
27.28 0.243 9.77 0.464 0.52 0.452 -0.102 -- -0.014 15.6 30.9 2580 -- --
27.26 0.243 9.8 0.308 0.516 0.362 -- 0.902 -0.029 15.7 30.7 2509 -- --
27.25 0.243 9.78 0.445 0.523 0.46 -- -- -0.034 15.7 31.31 2559 -- --
41.74 0.301 9.8 0.276 -- 0.394 -- 1.1 -0.0386 -- 30.9 2587 -- --
35.93 0.281 9.76 0.331 0.559 -- -0.00389 -- 0.06 15.5 -- -- -- --
35.93 0.281 9.76 0.331 0.559 -- -- -- 0.0599 15.5 -- -- -- --
41.79 0.301 9.78 0.45 -- 0.522 -- -- -0.0543 -- 31.22 2586 -- --
31.86 0.263 9.78 -- 0.505 0.378 -- -- -0.054 15.6 32.6 5555 -- --
53.47 0.342 9.76 0.307 -- -- -- -- 0.0451 -- -- -- -- --
38.82 0.291 9.77 -- 0.553 -- -- -- 0.0231 15.5 -- -- -- --
46.12 0.316 9.79 -- -- 0.453 -- -- -0.08 -- 32.6 5520 -- --
55.96 0.349 9.76 -- -- -- -- -- 0.011 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.17 temperature 10.0 270 > th dose dependent rect. 2 15
3 25.26 temperature 30.0 270 < th dose independent rect. 6 19
4 25.37 temperature 10.0 270 > th dose dependent rect. 11 20
6 25.38 temperature 10.0 30 > th dose dependent rect. 12 21
15 25.79 temperature 10.0 270 > th dose dependent rect. 12 18
17 25.83 temperature 30.0 90 < th dose independent rect. 9 18
23 25.94 temperature 30.0 270 < th dose independent rect. 16 10
33 26.17 humidity 70.0 270 > th dose independent rect. 17 9
36 26.19 precipitation 0.1 270 < th dose independent rect. 12 18
38 26.19 precipitation 0.1 270 < th dose dependent rect. 12 18
42 26.33 atmosphere 995.0 30 > th dose dependent rect. 9 18
60 26.53 radiation 20.0 270 < th dose dependent rect. 16 10
63 26.55 radiation 10.0 270 < th dose independent rect. 16 10
65 26.56 temperature 10.0 270 > th dose dependent rect. 11 9
68 26.57 temperature 10.0 10 > th dose dependent rect. 14 19
70 26.59 precipitation 0.1 270 < th dose independent rect. 11 20
71 26.59 precipitation 0.1 270 < th dose dependent rect. 11 20
72 26.60 temperature 10.0 270 > th dose independent rect. 6 6
73 26.60 atmosphere 995.0 270 > th dose independent rect. 6 6
74 26.60 atmosphere 1015.0 270 < th dose independent rect. 6 6
75 26.60 temperature 10.0 270 > th dose independent rect. 12 18
77 26.61 precipitation 0.1 270 < th dose independent rect. 6 6
78 26.61 precipitation 0.1 270 < th dose dependent rect. 6 6
85 26.67 wind 9.0 270 < th dose independent rect. 6 6
86 26.67 temperature 30.0 270 < th dose independent rect. 6 6
88 26.67 temperature 10.0 10 > th dose dependent rect. 3 6
91 26.70 precipitation 0.1 270 < th dose independent rect. 2 15
93 26.70 precipitation 0.1 270 < th dose dependent rect. 2 15
98 26.72 wind 9.0 270 < th dose independent rect. 12 18
112 26.76 temperature 10.0 270 > th dose dependent rect. 1 6
121 26.80 precipitation 0.1 30 < th dose independent rect. 12 21
123 26.80 precipitation 0.1 30 < th dose dependent rect. 12 21
132 26.87 precipitation 0.1 270 < th dose independent rect. 10 23
134 26.87 precipitation 0.1 270 < th dose dependent rect. 10 23
141 26.91 atmosphere 995.0 30 > th dose independent rect. 9 18
145 26.93 wind 5.0 30 < th dose independent rect. 3 6
146 26.93 atmosphere 995.0 270 > th dose independent rect. 17 9
149 26.93 wind 9.0 30 < th dose dependent rect. 3 6
166 27.00 temperature 10.0 1440 > th dose independent rect. 10 3
169 27.00 atmosphere 995.0 1440 > th dose independent rect. 10 3
170 27.00 temperature 10.0 1440 > th dose independent rect. 13 21
178 27.01 atmosphere 1000.0 10 > th dose dependent rect. 3 6
181 27.02 radiation 1.0 30 > th dose independent rect. 9 3
182 27.02 precipitation 0.1 10 < th dose independent rect. 3 6
185 27.02 precipitation 0.1 10 < th dose dependent rect. 3 6
188 27.03 temperature 10.0 270 > th dose independent rect. 17 9
193 27.03 temperature 10.0 270 > th dose independent rect. 2 15
194 27.03 atmosphere 1015.0 270 < th dose independent rect. 2 15
198 27.04 temperature 10.0 30 > th dose independent rect. 9 3
200 27.04 atmosphere 995.0 30 > th dose independent rect. 9 3
201 27.04 atmosphere 1015.0 30 < th dose independent rect. 9 3
202 27.04 precipitation 0.1 30 < th dose independent rect. 9 3
203 27.04 temperature 10.0 270 > th dose independent rect. 7 4
204 27.04 atmosphere 995.0 270 > th dose independent rect. 7 4
205 27.04 atmosphere 1015.0 270 < th dose independent rect. 7 4
206 27.04 temperature 30.0 270 < th dose independent rect. 17 19
207 27.04 temperature 10.0 270 > th dose independent rect. 11 20
208 27.04 temperature 10.0 30 > th dose independent rect. 12 21
209 27.04 precipitation 0.1 30 < th dose dependent rect. 9 3
211 27.05 precipitation 0.1 270 < th dose independent rect. 7 4
212 27.05 wind 9.0 270 < th dose independent rect. 17 9
213 27.05 precipitation 0.1 270 < th dose dependent rect. 7 4
216 27.07 wind 9.0 270 < th dose independent rect. 7 4
218 27.07 radiation 10.0 270 < th dose dependent rect. 7 19
225 27.10 wind 9.0 270 < th dose independent rect. 9 1
226 27.10 temperature 10.0 270 > th dose independent rect. 9 1
227 27.10 atmosphere 995.0 270 > th dose independent rect. 9 1
228 27.10 atmosphere 1015.0 270 < th dose independent rect. 9 1
229 27.10 humidity 50.0 270 > th dose independent rect. 6 6
230 27.10 temperature 10.0 270 > th dose independent rect. 10 23
234 27.11 precipitation 0.1 270 < th dose independent rect. 9 1
236 27.11 temperature 30.0 270 < th dose independent rect. 7 4
240 27.11 wind 9.0 30 < th dose independent rect. 12 21
241 27.11 precipitation 0.1 270 < th dose dependent rect. 9 1
261 27.15 wind 9.0 270 < th dose independent rect. 11 20
262 27.16 wind 9.0 270 < th dose independent rect. 2 15
265 27.17 radiation 30.0 90 < th dose independent rect. 3 6
279 27.20 temperature 10.0 30 > th dose independent rect. 3 6
281 27.20 temperature 30.0 30 < th dose independent rect. 3 6
282 27.20 humidity 50.0 30 > th dose independent rect. 3 6
284 27.20 atmosphere 995.0 30 > th dose independent rect. 3 6
285 27.20 atmosphere 1015.0 30 < th dose independent rect. 3 6
286 27.20 temperature 10.0 30 > th dose independent rect. 9 18
288 27.21 wind 9.0 30 < th dose independent rect. 9 3
289 27.21 humidity 50.0 270 > th dose independent rect. 7 4
306 27.22 wind 1.0 30 > th dose independent rect. 9 3
308 27.22 humidity 50.0 270 > th dose independent rect. 6 19
315 27.24 humidity 50.0 270 > th dose independent rect. 9 1
329 27.29 precipitation 0.1 270 < th dose independent rect. 23 8
330 27.29 precipitation 0.1 270 < th dose dependent rect. 23 8
331 27.29 humidity 50.0 270 > th dose dependent rect. 16 9
335 27.30 precipitation 0.1 270 < th dose independent rect. 1 6
337 27.30 wind 9.0 10 < th dose independent rect. 9 18
338 27.30 precipitation 0.1 270 < th dose dependent rect. 1 6
375 27.36 wind 1.0 270 > th dose independent rect. 12 18
387 27.38 radiation 20.0 270 < th dose independent rect. 1 6
391 27.38 wind 7.0 270 < th dose independent rect. 23 8
403 27.40 wind 7.0 270 < th dose independent rect. 1 6
406 27.40 atmosphere 995.0 270 > th dose independent rect. 7 18
412 27.42 radiation 1.0 270 > th dose independent rect. 9 1
415 27.42 radiation 20.0 270 < th dose independent rect. 23 8
417 27.42 precipitation 0.1 10 < th dose independent rect. 9 18
420 27.42 precipitation 0.1 10 < th dose dependent rect. 9 18
427 27.44 humidity 70.0 270 > th dose independent rect. 1 6
432 27.45 atmosphere 1015.0 30 < th dose independent rect. 12 21
434 27.46 radiation 1.0 270 > th dose independent rect. 7 4
437 27.46 humidity 50.0 270 > th dose independent rect. 5 21
441 27.47 precipitation 0.1 270 < th dose independent rect. 3 2
442 27.47 atmosphere 1010.0 270 < th dose independent rect. 1 5
444 27.47 precipitation 0.1 10 < th dose independent rect. 14 19
445 27.47 precipitation 0.1 270 < th dose dependent rect. 3 2
448 27.47 precipitation 0.1 10 < th dose dependent rect. 14 19
452 27.48 humidity 70.0 270 > th dose independent rect. 23 8
459 27.49 temperature 10.0 270 > th dose independent rect. 1 6
461 27.49 temperature 30.0 270 < th dose independent rect. 1 6
462 27.49 humidity 50.0 270 > th dose independent rect. 1 6
464 27.49 atmosphere 995.0 270 > th dose independent rect. 1 6
467 27.49 temperature 10.0 270 > th dose independent rect. 7 18
468 27.49 radiation 1.0 270 > th dose independent rect. 10 21
475 27.51 radiation 1.0 270 > th dose independent rect. 6 6
476 27.51 atmosphere 995.0 270 > th dose independent rect. 7 16
478 27.51 radiation 40.0 270 < th dose dependent rect. 1 6
481 27.52 temperature 10.0 270 > th dose independent rect. 23 8
482 27.52 temperature 30.0 270 < th dose independent rect. 23 8
483 27.52 humidity 50.0 270 > th dose independent rect. 23 8
485 27.52 atmosphere 995.0 270 > th dose independent rect. 23 8
488 27.52 temperature 10.0 270 > th dose independent rect. 7 16
541 27.57 wind 9.0 270 < th dose independent rect. 7 18
548 27.58 atmosphere 1015.0 270 < th dose independent rect. 12 18
566 27.60 radiation 1.0 10 > th dose independent rect. 9 5
568 27.60 precipitation 0.1 270 < th dose independent rect. 17 9
572 27.60 temperature 30.0 1440 > th dose dependent rect. 12 1
573 27.60 temperature 10.0 270 > th dose dependent rect. 3 2
574 27.60 radiation 1.0 270 < th dose dependent rect. 3 2
577 27.60 precipitation 0.1 270 < th dose dependent rect. 17 9
585 27.62 radiation 1.0 270 < th dose independent rect. 6 20
588 27.63 wind 1.0 270 > th dose independent rect. 9 1
589 27.63 wind 7.0 270 < th dose independent rect. 3 2
593 27.63 humidity 50.0 270 > th dose dependent rect. 7 18
596 27.64 atmosphere 1015.0 270 < th dose independent rect. 23 8
606 27.65 wind 9.0 270 < th dose independent rect. 7 16
608 27.65 radiation 1.0 270 > th dose independent rect. 11 19
617 27.66 temperature 10.0 10 > th dose independent rect. 9 5
619 27.66 atmosphere 995.0 10 > th dose independent rect. 9 5
620 27.66 atmosphere 1015.0 10 < th dose independent rect. 9 5
621 27.66 precipitation 0.1 10 < th dose independent rect. 9 5
623 27.66 temperature 10.0 10 > th dose independent rect. 14 19
625 27.66 precipitation 0.1 10 < th dose dependent rect. 9 5
656 27.71 temperature 30.0 14400 > th dose independent rect. 17 1
672 27.72 temperature 10.0 270 > th dose independent rect. 3 2
674 27.72 temperature 30.0 270 < th dose independent rect. 3 2
675 27.72 humidity 50.0 270 > th dose independent rect. 3 2
678 27.72 atmosphere 995.0 270 > th dose independent rect. 3 2
679 27.72 atmosphere 1010.0 270 < th dose independent rect. 3 2
681 27.72 radiation 20.0 270 < th dose independent rect. 3 2
689 27.72 temperature 10.0 270 > th dose independent rect. 5 22
704 27.73 radiation 1.0 270 < th dose independent rect. 3 2
708 27.73 wind 9.0 270 < th dose dependent rect. 9 1
720 27.73 atmosphere 1015.0 270 < th dose dependent rect. 12 7
759 27.74 temperature 30.0 1440 > th dose independent rect. 16 1
762 27.74 humidity 70.0 10 > th dose independent rect. 18 9
764 27.74 temperature 25.0 4320 > th dose dependent rect. 7 1
779 27.76 humidity 50.0 30 > th dose independent rect. 9 18
780 27.76 radiation 40.0 30 < th dose independent rect. 12 21
781 27.76 temperature 30.0 1440 > th dose dependent sin 6 NA
785 27.77 temperature 30.0 1440 < th dose independent rect. 16 1
794 27.77 wind 9.0 270 < th dose dependent rect. 7 4
797 27.78 temperature 30.0 14400 < th dose independent rect. 17 1
798 27.78 temperature 30.0 1440 < th dose independent rect. 8 5
804 27.78 temperature 30.0 1440 < th dose independent rect. 4 9
809 27.78 temperature 30.0 1440 < th dose independent rect. 23 14
822 27.78 temperature 30.0 270 < th dose dependent rect. 6 19
840 27.79 temperature 30.0 14400 > th dose dependent rect. 16 2
881 27.81 temperature 30.0 1440 > th dose independent rect. 9 4
898 27.81 humidity 70.0 270 > th dose independent rect. 7 18
902 27.81 temperature 25.0 1440 > th dose dependent rect. 18 1
905 27.81 atmosphere 995.0 90 > th dose dependent rect. 18 9
960 27.83 wind 1.0 270 > th dose independent rect. 1 5
974 27.83 temperature 25.0 1440 > th dose dependent rect. 4 4
981 27.84 wind 9.0 10 < th dose independent rect. 9 5