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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0498700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Haem peroxidase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.14 (0.04) R2 : 0.000207
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0259 (0.0843) R2dN8 : 0.000268 R2N8 : 0.000207
σ : 0.754
deviance : 260.7
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
238.96 0.726 3.19 -0.776 0.352 0.271 -1.41 -0.878 -0.195 3.56 20.5 96 -- --
241.37 0.724 3.18 -0.663 0.369 0.402 -1.01 -- -0.176 3.64 19.7 80 -- --
243.42 0.727 3.19 -0.712 0.365 0.27 -- -0.593 -0.186 4.17 20.56 228 -- --
244.01 0.728 3.17 -0.634 0.374 0.402 -- -- -0.145 4.14 19.67 80 -- --
249.64 0.736 3.2 -0.757 -- 0.155 -- -0.996 -0.191 -- 20.54 305 -- --
246.43 0.736 3.15 -0.518 0.317 -- -0.955 -- -0.0944 4.17 -- -- -- --
248.66 0.738 3.15 -0.507 0.326 -- -- -- -0.0892 5.05 -- -- -- --
251.31 0.738 3.16 -0.58 -- 0.293 -- -- -0.126 -- 19.58 88 -- --
253.39 0.741 3.14 -- 0.35 0.243 -- -- -0.0628 4.75 19.61 80 -- --
254.23 0.745 3.15 -0.495 -- -- -- -- -0.0809 -- -- -- -- --
255.43 0.748 3.14 -- 0.317 -- -- -- -0.0327 5.11 -- -- -- --
259.61 0.75 3.14 -- -- 0.172 -- -- -0.0467 -- 19.66 78 -- --
260.7 0.754 3.14 -- -- -- -- -- -0.0259 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 230.71 temperature 20.0 10 > th dose independent rect. 12 16
3 231.93 precipitation 0.1 270 > th dose independent rect. 2 2
4 231.96 precipitation 0.1 270 > th dose dependent rect. 2 2
5 231.98 temperature 20.0 10 > th dose independent rect. 20 10
6 231.99 temperature 20.0 10 > th dose independent rect. 20 8
7 232.13 temperature 20.0 10 > th dose independent rect. 12 18
9 232.52 temperature 20.0 90 > th dose independent rect. 21 9
14 232.67 temperature 20.0 90 > th dose independent rect. 23 7
16 232.76 temperature 20.0 270 > th dose independent rect. 21 7
22 232.95 temperature 20.0 10 > th dose independent rect. 12 14
24 233.02 wind 1.0 270 < th dose dependent rect. 24 1
31 233.27 precipitation 0.1 30 > th dose independent rect. 3 5
51 233.28 precipitation 0.1 30 > th dose dependent rect. 3 5
63 233.29 precipitation 0.1 30 > th dose independent rect. 3 3
76 233.30 precipitation 0.1 30 > th dose dependent rect. 3 3
91 233.65 radiation 10.0 720 < th dose independent rect. 15 15
97 233.74 temperature 15.0 10 > th dose dependent rect. 12 14
98 233.75 temperature 20.0 90 > th dose independent rect. 23 5
99 233.75 temperature 15.0 10 > th dose dependent rect. 12 16
130 234.34 radiation 20.0 30 > th dose dependent rect. 12 3
144 234.67 precipitation 0.1 270 > th dose independent rect. 23 5
147 234.71 precipitation 0.1 270 > th dose dependent rect. 23 5
150 234.73 temperature 15.0 10 > th dose dependent rect. 12 18
172 234.80 temperature 10.0 90 > th dose dependent rect. 11 19
177 234.84 radiation 30.0 10 > th dose independent rect. 12 3
188 235.02 atmosphere 1005.0 270 < th dose dependent rect. 1 1
206 235.04 temperature 10.0 270 > th dose dependent rect. 9 19
208 235.06 wind 3.0 43200 < th dose dependent rect. 10 1
226 235.23 temperature 20.0 270 > th dose independent rect. 23 2
231 235.26 temperature 20.0 10 < th dose independent rect. 22 6
288 235.39 atmosphere 1005.0 10 < th dose dependent rect. 24 4
317 235.55 wind 1.0 270 < th dose independent rect. 23 2
318 235.55 radiation 10.0 720 < th dose independent rect. 16 7
321 235.57 humidity 90.0 90 > th dose dependent rect. 1 4
327 235.62 temperature 20.0 10 < th dose independent rect. 20 9
334 235.65 wind 9.0 90 > th dose independent rect. 13 2
336 235.66 wind 9.0 90 > th dose dependent rect. 13 2
340 235.68 temperature 10.0 270 > th dose dependent rect. 8 22
344 235.71 radiation 1.0 10 > th dose dependent rect. 12 19
345 235.72 wind 9.0 10 > th dose independent rect. 13 1
359 235.72 wind 9.0 10 > th dose dependent rect. 13 1
375 235.73 temperature 20.0 10 > th dose independent sin 11 NA
385 235.81 precipitation 0.1 30 < th dose independent sin 3 NA
386 235.81 precipitation 0.1 30 < th dose dependent sin 3 NA
397 235.88 temperature 20.0 90 < th dose independent rect. 23 4
404 235.95 temperature 20.0 90 > th dose independent sin 11 NA
428 235.99 temperature 20.0 270 < th dose independent rect. 23 1
450 236.06 atmosphere 1005.0 30 > th dose dependent rect. 12 3
461 236.08 wind 5.0 30 > th dose dependent rect. 1 7
501 236.19 wind 3.0 43200 < th dose dependent rect. 7 7
502 236.20 humidity 90.0 90 > th dose independent rect. 1 4
512 236.24 wind 3.0 43200 < th dose dependent rect. 7 5
523 236.30 humidity 90.0 14400 > th dose dependent rect. 6 1
547 236.33 wind 5.0 10 > th dose independent rect. 1 7
554 236.36 wind 5.0 10 > th dose independent rect. 23 7
577 236.44 temperature 20.0 10 < th dose independent rect. 18 11
586 236.47 humidity 90.0 90 > th dose independent rect. 3 2
588 236.47 wind 5.0 90 > th dose independent rect. 1 7
597 236.52 precipitation 0.1 14400 < th dose independent rect. 13 1
600 236.52 precipitation 0.1 14400 < th dose dependent rect. 13 1
614 236.55 wind 3.0 43200 < th dose dependent rect. 19 20
662 236.59 wind 3.0 43200 < th dose dependent rect. 21 18
664 236.60 wind 5.0 10 > th dose independent rect. 23 11
680 236.60 wind 3.0 43200 < th dose dependent rect. 19 17
689 236.61 precipitation 0.1 30 > th dose independent sin 2 NA
721 236.68 wind 9.0 720 > th dose independent rect. 19 2
724 236.68 radiation 10.0 720 < th dose dependent rect. 14 16
729 236.69 humidity 90.0 14400 > th dose independent rect. 4 4
748 236.72 precipitation 0.1 30 > th dose dependent sin 3 NA
758 236.74 atmosphere 1000.0 270 > th dose independent rect. 24 14
759 236.74 wind 3.0 43200 < th dose dependent sin 2 NA
765 236.76 temperature 25.0 270 > th dose independent rect. 11 2
770 236.76 radiation 10.0 720 < th dose dependent rect. 16 14
775 236.77 wind 3.0 43200 < th dose independent rect. 5 22
776 236.77 wind 3.0 43200 < th dose independent rect. 9 22
798 236.79 wind 3.0 43200 < th dose independent rect. 1 23
810 236.80 wind 3.0 43200 < th dose independent rect. 22 22
812 236.80 wind 7.0 270 > th dose dependent rect. 24 4
826 236.81 wind 9.0 720 > th dose dependent rect. 19 1
830 236.82 atmosphere 1005.0 270 < th dose independent rect. 23 2
832 236.82 humidity 90.0 14400 > th dose independent rect. 3 6
833 236.82 precipitation 0.1 90 > th dose independent rect. 23 9
836 236.82 wind 3.0 43200 < th dose independent rect. 18 22
841 236.82 wind 3.0 43200 < th dose dependent rect. 5 23
852 236.83 wind 3.0 43200 < th dose independent rect. 13 23
857 236.83 wind 3.0 43200 < th dose dependent rect. 1 23
867 236.85 wind 3.0 43200 < th dose independent no NA NA
873 236.85 wind 3.0 43200 > th dose independent rect. 5 22
874 236.85 wind 3.0 43200 > th dose independent rect. 9 22
881 236.85 wind 3.0 43200 < th dose dependent rect. 3 21
888 236.86 wind 3.0 43200 > th dose independent rect. 22 22
889 236.86 precipitation 0.1 90 > th dose dependent rect. 23 9
894 236.86 wind 3.0 43200 < th dose dependent rect. 3 23
902 236.88 wind 7.0 270 > th dose independent rect. 24 4
903 236.88 wind 3.0 43200 < th dose independent rect. 5 19
920 236.89 wind 3.0 43200 > th dose independent rect. 1 23
923 236.89 wind 3.0 43200 < th dose dependent no NA NA
930 236.89 wind 3.0 43200 < th dose dependent rect. 8 23
931 236.90 radiation 10.0 720 < th dose independent sin 14 NA
932 236.90 humidity 90.0 14400 > th dose independent rect. 5 2
933 236.90 wind 1.0 43200 < th dose independent rect. 8 3
935 236.90 wind 3.0 43200 < th dose independent rect. 18 10
943 236.90 wind 3.0 43200 > th dose independent rect. 13 23
948 236.90 wind 3.0 43200 < th dose dependent rect. 5 19
952 236.91 temperature 20.0 90 > th dose independent rect. 23 16
971 236.93 humidity 90.0 14400 > th dose independent rect. 2 8
972 236.93 atmosphere 1000.0 30 > th dose independent rect. 24 15
981 236.93 wind 3.0 43200 > th dose independent rect. 17 23
987 236.94 temperature 20.0 720 > th dose independent rect. 18 5
989 236.94 wind 3.0 43200 < th dose independent rect. 1 19
1000 236.95 wind 3.0 43200 > th dose independent no NA NA