Os04g0498400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0498400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.66 | 0.284 | 8.84 | 0.22 | 0.477 | -0.638 | -0.0671 | 8.3 | -0.381 | 7.86 | 29.9 | 1334 | -- | -- |
| 39.83 | 0.294 | 9.01 | -1.27 | 0.496 | 0.367 | -0.0247 | -- | -0.389 | 7.94 | 29.61 | 3837 | -- | -- |
| 36.66 | 0.282 | 8.84 | 0.213 | 0.48 | -0.633 | -- | 8.25 | -0.376 | 7.83 | 29.8 | 1322 | -- | -- |
| 39.77 | 0.294 | 9.02 | -1.27 | 0.508 | 0.376 | -- | -- | -0.393 | 7.77 | 29.7 | 3908 | -- | -- |
| 48.88 | 0.326 | 8.83 | 0.449 | -- | -0.762 | -- | 9.3 | -0.369 | -- | 29.8 | 1391 | -- | -- |
| 44.52 | 0.313 | 9.03 | -1.18 | 0.5 | -- | -0.022 | -- | -0.452 | 7.52 | -- | -- | -- | -- |
| 44.52 | 0.312 | 9.03 | -1.18 | 0.5 | -- | -- | -- | -0.452 | 7.51 | -- | -- | -- | -- |
| 52.39 | 0.337 | 9.03 | -1.27 | -- | 0.326 | -- | -- | -0.406 | -- | 29.2 | 5690 | -- | -- |
| 80.2 | 0.417 | 8.99 | -- | 0.491 | 0.153 | -- | -- | -0.292 | 7.79 | 31.37 | 3963 | -- | -- |
| 57.88 | 0.355 | 9.04 | -1.17 | -- | -- | -- | -- | -0.444 | -- | -- | -- | -- | -- |
| 81.01 | 0.421 | 9 | -- | 0.49 | -- | -- | -- | -0.321 | 7.68 | -- | -- | -- | -- |
| 71.9 | 0.395 | 8.96 | -- | -- | -0.754 | -- | -- | -0.0884 | -- | 7.277 | 47520 | -- | -- |
| 93.93 | 0.452 | 9.01 | -- | -- | -- | -- | -- | -0.314 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.95 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 23 |
| 2 | 36.33 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 3 | 36.35 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 5 | 36.44 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 6 | 36.57 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 8 | 36.61 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 19 |
| 9 | 36.63 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 4 |
| 12 | 36.67 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 3 |
| 13 | 36.68 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 20 | 36.70 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 25 | 36.73 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 27 | 36.73 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 4 |
| 30 | 36.74 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 45 | 36.75 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 12 | 6 |
| 79 | 36.77 | temperature | 30.0 | 1440 | > th | dose dependent | sin | 19 | NA |
| 88 | 36.78 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 92 | 36.79 | temperature | 30.0 | 1440 | > th | dose dependent | no | NA | NA |
| 221 | 36.81 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 267 | 36.84 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 270 | 36.85 | temperature | 30.0 | 1440 | > th | dose independent | sin | 10 | NA |
| 272 | 36.86 | temperature | 30.0 | 1440 | > th | dose independent | sin | 8 | NA |
| 274 | 36.86 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 320 | 36.90 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 9 |
| 331 | 36.92 | temperature | 30.0 | 1440 | < th | dose independent | sin | 8 | NA |
| 369 | 36.93 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 372 | 36.94 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 388 | 36.97 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 409 | 36.99 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 17 |
| 434 | 37.01 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 22 | 15 |
| 437 | 37.02 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 440 | 37.02 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 443 | 37.02 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 451 | 37.04 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 499 | 37.09 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 530 | 37.15 | temperature | 30.0 | 1440 | > th | dose dependent | sin | 10 | NA |
| 540 | 37.18 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 577 | 37.24 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 676 | 37.50 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 703 | 37.55 | temperature | 30.0 | 1440 | > th | dose independent | no | NA | NA |
| 800 | 37.57 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 802 | 37.57 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 14 |
| 840 | 37.58 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 18 |
| 902 | 37.66 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 905 | 37.66 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 909 | 37.66 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 921 | 37.67 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 927 | 37.68 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 17 | 12 |
| 933 | 37.70 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 17 | 5 |
| 934 | 37.70 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 937 | 37.70 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 949 | 37.72 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 978 | 37.74 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 979 | 37.74 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 983 | 37.75 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 988 | 37.75 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 991 | 37.76 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 998 | 37.77 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 17 | 1 |