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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0498100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.23 (0.0385) R2 : 0.00588
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.133 (0.0811) R2dN8 : 0.00759 R2N8 : 0.00588
σ : 0.726
deviance : 241.81
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
232.65 0.717 3.24 -0.0474 0.00549 -0.0311 0.959 -1.88 -0.126 5.38 58 4441 -- --
235.82 0.715 3.24 -0.00294 0.0194 -0.38 -0.941 -- -0.157 17 35 5717 -- --
234.81 0.714 3.25 -0.041 0.0137 -0.0226 -- -1.96 -0.128 5.4 57.12 4505 -- --
238.01 0.719 3.25 -0.0214 0.0867 -0.33 -- -- -0.169 12.3 35 5598 -- --
234.82 0.714 3.25 -0.0415 -- -0.0194 -- -1.97 -0.127 -- 57 4505 -- --
238.9 0.725 3.23 -0.137 0.00712 -- -0.979 -- -0.144 17.2 -- -- -- --
240.82 0.727 3.23 -0.135 0.089 -- -- -- -0.148 11 -- -- -- --
238.31 0.719 3.24 0.0116 -- -0.379 -- -- -0.161 -- 37.77 6299 -- --
237.88 0.718 3.24 -- 0.0834 -0.371 -- -- -0.161 11.1 35.07 8826 -- --
241.31 0.726 3.24 -0.137 -- -- -- -- -0.148 -- -- -- -- --
241.3 0.727 3.23 -- 0.0902 -- -- -- -0.133 11.1 -- -- -- --
238.31 0.719 3.24 -- -- -0.374 -- -- -0.161 -- 36.54 8789 -- --
241.81 0.726 3.23 -- -- -- -- -- -0.133 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 225.98 radiation 1.0 90 < th dose independent rect. 10 1
3 225.98 radiation 1.0 90 < th dose dependent rect. 10 1
5 226.64 wind 1.0 10 < th dose independent rect. 5 1
7 227.43 radiation 1.0 10 < th dose independent rect. 7 5
9 227.43 radiation 1.0 10 < th dose dependent rect. 7 5
11 228.06 radiation 1.0 10 < th dose independent rect. 11 1
28 228.06 radiation 1.0 10 < th dose dependent rect. 11 1
53 229.79 wind 1.0 10 < th dose independent rect. 5 7
56 230.21 humidity 60.0 90 > th dose independent sin 11 NA
57 230.26 wind 5.0 4320 < th dose dependent rect. 11 1
58 230.27 wind 1.0 10 < th dose independent rect. 5 19
66 230.68 humidity 60.0 90 < th dose independent sin 11 NA
67 230.70 wind 1.0 10 < th dose independent rect. 5 17
68 230.79 wind 1.0 4320 > th dose dependent rect. 11 1
69 230.80 temperature 30.0 10 > th dose independent rect. 15 1
74 230.88 radiation 10.0 720 < th dose independent rect. 2 5
77 230.93 wind 5.0 4320 < th dose independent rect. 12 1
78 230.94 humidity 60.0 10 < th dose independent sin 10 NA
79 230.94 humidity 70.0 4320 > th dose independent rect. 8 1
80 230.94 humidity 70.0 4320 < th dose independent rect. 8 1
83 231.01 wind 3.0 4320 > th dose independent rect. 11 1
84 231.04 humidity 70.0 4320 > th dose independent rect. 22 12
85 231.05 humidity 70.0 4320 > th dose independent rect. 6 4
90 231.05 humidity 70.0 4320 > th dose independent rect. 24 10
96 231.11 humidity 70.0 4320 < th dose independent rect. 6 4
109 231.15 humidity 80.0 4320 < th dose dependent rect. 6 4
120 231.29 humidity 80.0 4320 < th dose dependent rect. 1 9
146 231.51 radiation 1.0 270 < th dose independent rect. 8 4
148 231.51 radiation 1.0 270 < th dose dependent rect. 8 4
149 231.52 humidity 60.0 90 < th dose independent rect. 15 20
152 231.54 precipitation 0.1 720 < th dose independent rect. 19 19
155 231.54 precipitation 0.1 720 < th dose dependent rect. 19 19
156 231.56 atmosphere 995.0 10 > th dose dependent rect. 24 13
159 231.60 humidity 70.0 90 < th dose dependent rect. 16 19
163 231.63 radiation 30.0 720 < th dose dependent rect. 2 6
188 231.69 radiation 20.0 720 < th dose independent rect. 17 15
207 231.79 atmosphere 1005.0 90 < th dose independent rect. 16 16
208 231.80 radiation 20.0 270 > th dose dependent rect. 16 16
234 232.03 wind 9.0 720 < th dose dependent rect. 11 2
237 232.04 humidity 60.0 10 < th dose independent rect. 15 21
238 232.04 humidity 60.0 4320 > th dose dependent rect. 8 1
256 232.13 radiation 20.0 270 > th dose independent rect. 16 16
264 232.16 radiation 10.0 720 < th dose independent rect. 19 12
316 232.29 atmosphere 1005.0 90 < th dose independent rect. 16 22
336 232.33 humidity 60.0 90 < th dose dependent rect. 8 3
353 232.35 atmosphere 1005.0 30 > th dose independent rect. 24 13
372 232.40 wind 9.0 720 < th dose dependent rect. 10 4
373 232.41 humidity 60.0 4320 < th dose dependent rect. 12 1
379 232.43 humidity 70.0 4320 > th dose independent sin 9 NA
388 232.44 humidity 70.0 4320 < th dose independent sin 9 NA
389 232.44 humidity 60.0 4320 < th dose independent rect. 11 2
421 232.51 humidity 60.0 10 < th dose independent rect. 9 3
436 232.51 atmosphere 1005.0 270 < th dose independent rect. 16 20
440 232.52 humidity 80.0 90 > th dose independent rect. 11 1
442 232.52 wind 1.0 10 > th dose independent rect. 1 23
469 232.61 humidity 70.0 90 < th dose dependent sin 11 NA
498 232.62 temperature 30.0 720 < th dose independent rect. 19 19
499 232.62 humidity 60.0 10 < th dose dependent sin 7 NA
502 232.63 precipitation 0.1 720 < th dose independent rect. 19 10
507 232.63 precipitation 0.1 720 < th dose dependent rect. 19 10
509 232.64 humidity 60.0 90 < th dose independent rect. 9 2
510 232.64 atmosphere 1005.0 90 > th dose independent rect. 3 9
567 232.67 wind 3.0 90 > th dose independent rect. 23 13
594 232.72 humidity 60.0 4320 > th dose independent rect. 11 1
607 232.75 humidity 80.0 4320 < th dose dependent sin 8 NA
617 232.77 temperature 15.0 10 > th dose dependent rect. 16 12
621 232.79 temperature 25.0 90 < th dose independent rect. 9 3
625 232.79 atmosphere 1015.0 30 < th dose dependent rect. 1 23
626 232.80 radiation 30.0 270 > th dose independent rect. 15 18
632 232.81 wind 1.0 10 < th dose dependent rect. 5 1
643 232.83 wind 9.0 720 < th dose independent rect. 11 18
651 232.85 atmosphere 995.0 30 > th dose dependent rect. 14 23
691 232.87 radiation 20.0 270 > th dose dependent rect. 15 18
692 232.88 atmosphere 1005.0 90 > th dose independent rect. 11 1
694 232.88 atmosphere 1005.0 30 > th dose independent rect. 9 11
700 232.89 humidity 80.0 10 > th dose dependent rect. 12 1
703 232.90 humidity 60.0 10 > th dose independent sin 6 NA
747 232.93 radiation 20.0 270 > th dose dependent rect. 7 1
775 232.94 precipitation 0.1 4320 > th dose dependent rect. 14 4
810 232.98 wind 7.0 720 < th dose independent rect. 19 19
816 232.99 humidity 60.0 4320 > th dose independent rect. 15 1
831 233.02 temperature 30.0 720 < th dose independent rect. 11 3
845 233.03 atmosphere 1005.0 90 > th dose independent rect. 9 3
862 233.04 humidity 60.0 4320 < th dose independent sin 5 NA
864 233.04 atmosphere 1005.0 270 < th dose independent sin 11 NA
872 233.04 temperature 30.0 10 < th dose dependent rect. 9 4
904 233.06 atmosphere 1015.0 90 < th dose dependent rect. 5 23
927 233.08 wind 1.0 10 > th dose independent rect. 16 19
934 233.08 radiation 40.0 720 < th dose dependent rect. 17 15
945 233.09 atmosphere 1005.0 270 > th dose independent rect. 16 20
954 233.10 radiation 40.0 90 < th dose independent rect. 3 12
996 233.12 humidity 60.0 30 > th dose independent rect. 1 23