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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0498000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF828, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.43 (0.0278) R2 : 0.398
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.15 (0.0664) R2dC : 0.396 R2C : 0.392
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.114 (0.0585) R2dN8 : 0.00647 R2N8 : 0.00293
σ : 0.525
deviance : 125.8
__
_____
C
peak time of C : 11.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
111.74 0.497 5.4 0.231 1.09 1.02 -0.0161 -0.304 0.256 11.2 1.417 1416 -- --
111.64 0.492 5.41 0.187 1.02 1.06 -0.00761 -- 0.248 11.2 1.539 1389 -- --
111.55 0.492 5.41 0.22 1.03 1.02 -- -0.302 0.255 11.2 1.553 1393 -- --
111.62 0.492 5.41 0.188 1 1.09 -- -- 0.25 11.3 1.56 1387 -- --
139.36 0.553 5.47 -0.101 -- -0.794 -- -0.157 0.0855 -- 1.553 1393 -- --
125.7 0.526 5.44 -0.0567 1.15 -- 0.0748 -- 0.108 11.3 -- -- -- --
125.72 0.525 5.43 -0.0537 1.15 -- -- -- 0.108 11.3 -- -- -- --
139.51 0.553 5.47 -0.103 -- -0.794 -- -- 0.0846 -- 1.56 1387 -- --
112.41 0.494 5.41 -- 1.01 0.995 -- -- 0.218 11.2 1.724 1387 -- --
208.03 0.674 5.46 -0.0823 -- -- -- -- 0.0974 -- -- -- -- --
125.8 0.525 5.43 -- 1.15 -- -- -- 0.114 11.3 -- -- -- --
139.77 0.552 5.46 -- -- -0.794 -- -- 0.0942 -- 1.724 1387 -- --
208.21 0.674 5.46 -- -- -- -- -- 0.106 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 109.27 wind 7 43200 > th dose independent rect. 15 1
2 109.53 wind 7 43200 < th dose independent rect. 15 1
3 109.62 radiation 1 720 > th dose independent rect. 17 2
13 109.91 humidity 50 720 > th dose dependent rect. 17 7
17 110.09 radiation 1 720 < th dose dependent rect. 17 8
18 110.15 humidity 90 720 < th dose dependent rect. 17 4
21 110.31 humidity 90 720 > th dose dependent rect. 12 11
31 110.53 humidity 80 720 < th dose independent rect. 17 3
35 110.58 radiation 1 720 > th dose independent rect. 9 10
46 110.61 radiation 1 720 < th dose independent rect. 16 9
57 110.61 radiation 1 720 < th dose dependent rect. 6 18
72 110.78 radiation 1 720 < th dose independent rect. 7 17
83 110.95 radiation 1 1440 > th dose independent sin 15 NA
86 110.96 radiation 1 1440 < th dose independent rect. 16 5
88 110.97 wind 7 43200 < th dose independent rect. 15 6
110 111.01 radiation 1 1440 < th dose independent sin 15 NA
120 111.06 humidity 70 720 > th dose independent rect. 16 8
139 111.12 wind 7 43200 > th dose independent rect. 15 6
147 111.20 humidity 90 720 > th dose dependent rect. 19 4
148 111.20 wind 3 43200 > th dose dependent rect. 15 15
155 111.23 wind 3 43200 > th dose dependent rect. 12 19
156 111.24 wind 7 43200 < th dose independent rect. 15 3
157 111.25 wind 5 43200 < th dose independent rect. 15 15
169 111.28 wind 7 43200 > th dose independent rect. 15 4
194 111.37 radiation 1 1440 > th dose independent rect. 11 20
195 111.37 wind 5 43200 > th dose dependent rect. 15 6
201 111.40 wind 5 43200 < th dose independent sin 15 NA
203 111.40 radiation 1 1440 < th dose independent rect. 11 20
220 111.46 wind 5 43200 > th dose independent rect. 14 17
227 111.47 wind 3 43200 > th dose dependent sin 15 NA
242 111.50 wind 5 43200 > th dose dependent rect. 15 1
249 111.52 wind 5 43200 > th dose independent rect. 15 13
255 111.53 wind 5 43200 > th dose independent sin 16 NA
256 111.53 radiation 1 1440 > th dose independent rect. 12 7
291 111.57 humidity 80 1440 > th dose independent rect. 7 10
300 111.58 wind 5 43200 > th dose independent rect. 15 8
301 111.58 wind 5 43200 < th dose independent rect. 15 8
303 111.58 humidity 90 720 > th dose dependent rect. 21 2
327 111.63 radiation 1 43200 < th dose dependent rect. 21 7
333 111.64 radiation 1 1440 < th dose independent rect. 12 8
390 111.67 radiation 1 1440 < th dose dependent sin 16 NA
393 111.67 wind 9 43200 < th dose dependent rect. 9 21
407 111.69 wind 5 43200 < th dose independent rect. 6 14
410 111.69 wind 5 43200 < th dose independent rect. 4 16
421 111.70 wind 5 43200 < th dose independent rect. 9 13
454 111.73 radiation 1 1440 < th dose dependent rect. 11 9
497 111.76 humidity 80 1440 < th dose independent rect. 7 8
520 111.76 wind 3 43200 > th dose dependent rect. 24 20
568 111.79 wind 3 43200 > th dose dependent rect. 3 17
597 111.80 radiation 1 1440 < th dose dependent rect. 11 20
601 111.81 humidity 80 1440 < th dose independent rect. 7 10
640 111.83 radiation 1 1440 < th dose dependent rect. 16 5
657 111.84 wind 5 43200 > th dose independent rect. 9 13
698 111.86 wind 9 43200 < th dose dependent rect. 24 19
700 111.86 wind 9 43200 < th dose dependent rect. 24 21
708 111.87 wind 5 43200 > th dose independent rect. 6 14
717 111.87 radiation 1 1440 < th dose dependent rect. 6 15
739 111.88 wind 3 43200 > th dose dependent rect. 17 5
740 111.88 radiation 1 1440 < th dose dependent rect. 6 13
767 111.89 wind 5 43200 > th dose dependent rect. 15 3
847 111.93 wind 3 43200 > th dose dependent rect. 9 13
922 111.96 wind 5 43200 > th dose independent rect. 17 4
939 111.96 wind 9 43200 < th dose dependent rect. 20 23
947 111.97 radiation 1 1440 < th dose independent rect. 6 15
991 111.99 radiation 1 1440 > th dose independent rect. 6 13