Os04g0497400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 6,7-dimethyl-8-ribityllumazine synthase (Fragment).
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Os04g0497400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 6,7-dimethyl-8-ribityllumazine synthase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.63 | 0.321 | 10.4 | -0.935 | 0.013 | 0.649 | 0.665 | 1.22 | -0.408 | 20.6 | 7.74 | 8 | -- | -- |
| 48.33 | 0.324 | 10.4 | -0.929 | 0.00945 | 0.6 | 0.52 | -- | -0.405 | 16.7 | 4.061 | 5 | -- | -- |
| 47.69 | 0.322 | 10.4 | -0.939 | 0.0123 | 0.641 | -- | 0.808 | -0.405 | 21 | 7.524 | 7 | -- | -- |
| 48.96 | 0.326 | 10.4 | -0.915 | 0.057 | 0.67 | -- | -- | -0.405 | 23.9 | 3.49 | 5 | -- | -- |
| 47.69 | 0.322 | 10.4 | -0.942 | -- | 0.637 | -- | 0.82 | -0.406 | -- | 7.879 | 7 | -- | -- |
| 55.35 | 0.349 | 10.4 | -0.915 | 0.286 | -- | 0.234 | -- | -0.409 | 12.5 | -- | -- | -- | -- |
| 55.57 | 0.349 | 10.4 | -0.906 | 0.285 | -- | -- | -- | -0.408 | 12.3 | -- | -- | -- | -- |
| 49.03 | 0.326 | 10.4 | -0.91 | -- | 0.611 | -- | -- | -0.403 | -- | 4.68 | 7 | -- | -- |
| 70.79 | 0.392 | 10.4 | -- | 0.0475 | 0.664 | -- | -- | -0.303 | 23.3 | 3.449 | 7 | -- | -- |
| 60.69 | 0.364 | 10.4 | -0.916 | -- | -- | -- | -- | -0.412 | -- | -- | -- | -- | -- |
| 77.22 | 0.411 | 10.4 | -- | 0.298 | -- | -- | -- | -0.307 | 12.5 | -- | -- | -- | -- |
| 70.84 | 0.392 | 10.4 | -- | -- | 0.618 | -- | -- | -0.302 | -- | 4.318 | 7 | -- | -- |
| 82.81 | 0.425 | 10.4 | -- | -- | -- | -- | -- | -0.311 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.73 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 18 | 19 |
| 2 | 44.77 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 17 | 44.94 | temperature | 25.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 21 | 45.33 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 37 | 45.58 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 40 | 45.61 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 59 | 45.86 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 67 | 46.14 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 89 | 46.43 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 96 | 46.59 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 4 | 10 |
| 107 | 46.64 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 110 | 46.71 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 125 | 46.82 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 134 | 46.88 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 168 | 47.01 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 8 | 8 |
| 180 | 47.08 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 181 | 47.08 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 186 | 47.11 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 189 | 47.13 | wind | 9.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 192 | 47.14 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 5 |
| 198 | 47.17 | temperature | 10.0 | 90 | > th | dose dependent | sin | 3 | NA |
| 200 | 47.18 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 9 | 7 |
| 202 | 47.18 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 206 | 47.19 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 8 | 17 |
| 224 | 47.25 | radiation | 10.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 226 | 47.26 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 231 | 47.28 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 245 | 47.32 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 248 | 47.34 | radiation | 10.0 | 10 | > th | dose dependent | no | NA | NA |
| 250 | 47.34 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 7 | 11 |
| 341 | 47.35 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 357 | 47.36 | radiation | 30.0 | 10 | < th | dose independent | rect. | 9 | 23 |
| 360 | 47.36 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 361 | 47.37 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 3 | 15 |
| 424 | 47.45 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 426 | 47.45 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 458 | 47.50 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 496 | 47.53 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 4 | 9 |
| 510 | 47.53 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 8 | 17 |
| 593 | 47.56 | radiation | 40.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 596 | 47.56 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 11 | 6 |
| 602 | 47.57 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 12 | 4 |
| 645 | 47.60 | radiation | 40.0 | 270 | < th | dose dependent | sin | 6 | NA |
| 654 | 47.62 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 666 | 47.64 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 670 | 47.66 | radiation | 30.0 | 10 | < th | dose independent | rect. | 23 | 23 |
| 677 | 47.67 | radiation | 10.0 | 10 | > th | dose dependent | sin | 1 | NA |
| 684 | 47.68 | atmosphere | 1000.0 | 30 | > th | dose independent | sin | 23 | NA |
| 685 | 47.68 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 694 | 47.68 | radiation | 20.0 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 695 | 47.68 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 696 | 47.69 | temperature | 30.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 710 | 47.69 | radiation | 30.0 | 10 | > th | dose independent | rect. | 15 | 23 |
| 713 | 47.69 | radiation | 20.0 | 90 | > th | dose dependent | rect. | 7 | 9 |
| 724 | 47.69 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 10 | 14 |
| 745 | 47.69 | radiation | 20.0 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 748 | 47.70 | radiation | 20.0 | 90 | > th | dose dependent | no | NA | NA |
| 795 | 47.70 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 876 | 47.73 | atmosphere | 1005.0 | 43200 | < th | dose dependent | sin | 19 | NA |
| 879 | 47.73 | radiation | 20.0 | 90 | > th | dose dependent | sin | 2 | NA |
| 907 | 47.75 | radiation | 10.0 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 929 | 47.76 | radiation | 30.0 | 10 | < th | dose independent | sin | 3 | NA |
| 937 | 47.76 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 943 | 47.77 | radiation | 40.0 | 10 | < th | dose dependent | no | NA | NA |
| 973 | 47.79 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 990 | 47.79 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 19 | 21 |
| 996 | 47.80 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 7 |