Os04g0497300 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0497300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1138 family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.84	(0.389)	R²	:	0.115
β₁	:	13.2	(1.88)	R²_dD	:	14.2	R²_D	:	-25.3
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	106	(14.7)	R²_dE	:	389	R²_E	:	-396
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	511	(70.9)	R²_dD*E	:	390	R²_D*E	:	-383
γ₁	:	0.065	(0.0926)	R²_dN8	:	0.00129	R²_N8	:	-10.6
σ	:	0.806
deviance	:	299.26
__

_____

C
peak time of C	:	--
E
wheather	:	wind
threshold	:	7.032
memory length	:	1520
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	4.01
open length of G	:	1.62

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
296.34	0.809	5.84	13.3	0.129	106	0.897	513	0.0651	6.44	7.013	1449	4	1.01
332.01	0.855	3.05	-0.257	0.181	0.259	0.676	--	0.0539	6.59	4.299	582	5.1	10.1
297.88	0.804	5.83	13.2	0.156	106	--	510	0.0638	8.64	6.977	1451	4.01	1.04
328.47	0.844	3.04	-0.181	0.311	0.581	--	--	0.052	6.71	3.607	1166	4.97	9.07
299.26	0.806	5.84	13.2	--	106	--	511	0.065	--	7.032	1520	4.01	1.62
332.61	0.855	3.05	-0.288	0.183	--	0.665	--	0.0435	6.78	--	--	--	--
333.73	0.855	3.05	-0.276	0.185	--	--	--	0.0419	7.02	--	--	--	--
329.44	0.845	3.04	-0.0999	--	0.639	--	--	0.0999	--	6.208	1162	4.88	8.8
327.1	0.842	3.05	--	0.222	0.662	--	--	0.126	6.8	5.6	1160	6.38	6.57
335.53	0.856	3.06	-0.273	--	--	--	--	0.0453	--	--	--	--	--
335.75	0.857	3.05	--	0.182	--	--	--	0.0727	7.12	--	--	--	--
329.35	0.845	3.04	--	--	0.671	--	--	0.125	--	5.794	1162	6.42	6.42
337.5	0.857	3.05	--	--	--	--	--	0.0756	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	296.34	wind	7.0	1440	> th	dose dependent	rect.	4	1
4	296.35	wind	7.0	1440	> th	dose independent	rect.	4	1
13	301.52	wind	7.0	1440	> th	dose dependent	rect.	1	4
19	302.52	wind	7.0	1440	> th	dose independent	rect.	1	4
29	311.11	humidity	50.0	10	< th	dose independent	rect.	11	1
121	311.11	humidity	50.0	10	< th	dose dependent	rect.	11	1
223	314.96	humidity	60.0	43200	> th	dose independent	rect.	20	1
224	315.51	wind	1.0	270	< th	dose dependent	rect.	1	1
225	315.75	wind	1.0	30	< th	dose dependent	rect.	1	1
232	316.18	humidity	60.0	43200	> th	dose independent	rect.	20	12
234	316.48	wind	1.0	10	< th	dose dependent	rect.	22	5
243	316.59	humidity	60.0	43200	< th	dose independent	rect.	19	13
256	316.89	wind	1.0	10	< th	dose dependent	rect.	11	16
262	317.11	humidity	60.0	43200	< th	dose independent	rect.	7	1
265	317.14	humidity	60.0	43200	< th	dose independent	rect.	20	1
268	317.23	humidity	60.0	43200	> th	dose independent	rect.	7	1
271	317.36	humidity	70.0	43200	< th	dose dependent	rect.	20	1
272	317.39	humidity	70.0	43200	< th	dose dependent	rect.	20	12
273	317.46	wind	1.0	90	< th	dose independent	rect.	1	2
292	318.34	wind	1.0	270	< th	dose dependent	rect.	22	4
294	318.37	humidity	90.0	90	> th	dose independent	rect.	2	2
299	318.46	humidity	70.0	43200	< th	dose dependent	rect.	6	2
323	318.82	atmosphere	995.0	10	> th	dose dependent	rect.	11	17
326	318.90	humidity	60.0	43200	< th	dose independent	rect.	19	3
327	318.90	humidity	60.0	43200	> th	dose independent	rect.	18	15
332	318.97	wind	9.0	10	> th	dose independent	rect.	13	7
342	319.01	wind	7.0	270	< th	dose independent	rect.	12	11
343	319.01	wind	1.0	270	< th	dose dependent	rect.	13	14
359	319.20	humidity	60.0	43200	< th	dose independent	rect.	19	7
366	319.32	wind	1.0	10	< th	dose independent	rect.	22	4
372	319.36	precipitation	0.1	43200	< th	dose independent	rect.	8	1
373	319.36	precipitation	0.1	43200	< th	dose dependent	rect.	8	1
381	319.41	wind	1.0	10	< th	dose independent	rect.	15	11
400	319.63	wind	1.0	10	< th	dose independent	rect.	11	15
402	319.63	atmosphere	1000.0	10	> th	dose independent	rect.	11	17
404	319.71	precipitation	0.1	43200	> th	dose independent	rect.	8	1
407	319.71	precipitation	0.1	43200	> th	dose dependent	rect.	8	1
412	319.79	humidity	90.0	10	> th	dose dependent	rect.	3	1
452	320.30	wind	7.0	30	> th	dose independent	rect.	13	1
458	320.34	radiation	30.0	43200	< th	dose independent	rect.	5	2
462	320.36	temperature	25.0	14400	> th	dose independent	rect.	6	2
464	320.37	temperature	25.0	14400	< th	dose independent	rect.	6	2
466	320.38	wind	1.0	14400	< th	dose dependent	rect.	18	2
482	320.45	temperature	25.0	14400	> th	dose dependent	rect.	8	1
486	320.53	wind	9.0	90	> th	dose independent	rect.	12	8
487	320.53	wind	7.0	90	> th	dose dependent	rect.	13	1
492	320.57	temperature	20.0	90	< th	dose dependent	rect.	2	1
524	320.62	atmosphere	1015.0	10	< th	dose independent	rect.	4	23
525	320.63	radiation	30.0	43200	< th	dose independent	rect.	19	12
538	320.71	humidity	60.0	30	> th	dose independent	rect.	11	17
540	320.72	radiation	20.0	43200	> th	dose dependent	rect.	17	14
557	320.74	wind	9.0	90	> th	dose independent	rect.	12	11
560	320.74	radiation	30.0	43200	< th	dose independent	rect.	17	14
567	320.77	radiation	30.0	43200	< th	dose independent	rect.	22	9
591	320.80	wind	1.0	14400	< th	dose independent	rect.	18	2
602	320.80	radiation	20.0	43200	> th	dose dependent	rect.	6	1
604	320.80	wind	9.0	10	> th	dose dependent	rect.	13	3
623	320.83	precipitation	0.1	43200	> th	dose dependent	rect.	4	1
624	320.84	wind	1.0	43200	< th	dose dependent	rect.	15	5
626	320.85	wind	7.0	10	> th	dose dependent	rect.	13	1
628	320.86	radiation	30.0	43200	< th	dose independent	rect.	24	7
646	320.95	temperature	15.0	10	> th	dose independent	rect.	11	17
703	321.11	humidity	50.0	1440	> th	dose independent	rect.	5	6
715	321.15	wind	9.0	43200	< th	dose independent	rect.	11	1
752	321.17	wind	1.0	43200	< th	dose dependent	rect.	19	12
754	321.18	wind	9.0	43200	> th	dose independent	rect.	11	1
782	321.24	precipitation	0.1	10	< th	dose independent	rect.	11	17
784	321.24	wind	1.0	43200	< th	dose dependent	rect.	4	1
785	321.24	precipitation	0.1	10	< th	dose dependent	rect.	11	17
786	321.25	precipitation	0.1	43200	> th	dose independent	rect.	4	1
791	321.28	wind	9.0	720	< th	dose independent	rect.	8	8
816	321.37	temperature	30.0	30	< th	dose independent	rect.	11	17
820	321.38	wind	1.0	43200	< th	dose independent	rect.	16	4
821	321.38	temperature	10.0	10	> th	dose independent	rect.	4	7
823	321.38	temperature	10.0	1440	> th	dose independent	rect.	5	7
826	321.38	humidity	50.0	10	> th	dose independent	rect.	4	7
827	321.38	atmosphere	995.0	10	> th	dose independent	rect.	4	7
828	321.38	atmosphere	995.0	1440	> th	dose independent	rect.	5	7
829	321.38	atmosphere	1015.0	10	< th	dose independent	rect.	4	7
831	321.38	temperature	10.0	1440	> th	dose independent	rect.	12	17
836	321.40	wind	7.0	10	< th	dose independent	rect.	4	7
838	321.40	precipitation	0.1	10	< th	dose independent	rect.	4	7
841	321.40	precipitation	0.1	10	< th	dose dependent	rect.	4	7
852	321.44	humidity	60.0	10	< th	dose dependent	sin	8	NA
872	321.47	humidity	50.0	10	> th	dose independent	sin	9	NA
878	321.49	wind	1.0	43200	> th	dose independent	rect.	16	4
889	321.52	atmosphere	1015.0	270	< th	dose independent	rect.	12	11
891	321.54	wind	1.0	270	< th	dose independent	rect.	22	5
923	321.60	precipitation	0.1	43200	< th	dose independent	rect.	4	1
924	321.60	precipitation	0.1	43200	< th	dose dependent	rect.	4	1
931	321.63	temperature	30.0	14400	< th	dose independent	rect.	15	1
943	321.66	radiation	40.0	43200	< th	dose independent	rect.	16	16
944	321.66	temperature	25.0	14400	> th	dose dependent	sin	7	NA
965	321.68	temperature	30.0	14400	> th	dose independent	rect.	15	1
981	321.70	atmosphere	1015.0	10	< th	dose dependent	rect.	4	22
990	321.72	radiation	1.0	4320	< th	dose dependent	rect.	20	9