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Os04g0496400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.66 (0.0205) R2 : 0.0276
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.155 (0.0431) R2dN8 : 0.0356 R2N8 : 0.0276
σ : 0.386
deviance : 68.34
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.03 0.27 8.64 0.497 0.553 -0.521 0.15 -0.993 0.144 10.3 25.67 12 -- --
34.39 0.275 8.65 0.338 0.562 -0.441 0.44 -- 0.113 10.5 25.86 17 -- --
33.09 0.27 8.64 0.517 0.55 -0.528 -- -1.08 0.146 10.3 25.67 12 -- --
35.16 0.278 8.65 0.352 0.559 -0.452 -- -- 0.112 10.3 25.86 17 -- --
49.48 0.329 8.66 0.465 -- -0.797 -- -1.15 0.0901 -- 27.08 6 -- --
37.35 0.287 8.63 0.439 0.635 -- 0.464 -- 0.207 10.9 -- -- -- --
38.25 0.29 8.63 0.457 0.634 -- -- -- 0.208 10.8 -- -- -- --
51.62 0.335 8.68 0.272 -- -0.757 -- -- 0.047 -- 27.88 5 -- --
38.07 0.287 8.67 -- 0.525 -0.596 -- -- 0.0429 9.81 27.4 3 -- --
63.14 0.371 8.65 0.444 -- -- -- -- 0.204 -- -- -- -- --
43.76 0.309 8.64 -- 0.63 -- -- -- 0.157 10.8 -- -- -- --
53.43 0.34 8.69 -- -- -0.821 -- -- 0.00993 -- 27.8 2 -- --
68.34 0.386 8.66 -- -- -- -- -- 0.155 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.11 temperature 20.0 90 > th dose independent rect. 20 15
3 30.32 temperature 15.0 90 > th dose dependent rect. 20 15
7 30.71 temperature 20.0 10 > th dose independent rect. 21 14
10 30.74 temperature 15.0 10 > th dose dependent rect. 21 14
20 31.10 temperature 15.0 90 > th dose dependent rect. 23 12
27 31.29 temperature 20.0 90 > th dose independent rect. 23 12
34 31.43 temperature 30.0 90 < th dose dependent rect. 23 7
41 31.55 temperature 20.0 90 > th dose independent rect. 5 22
49 31.73 temperature 30.0 10 < th dose dependent sin 7 NA
51 31.80 temperature 10.0 10 > th dose dependent rect. 6 21
65 31.91 wind 5.0 90 < th dose dependent rect. 6 11
67 31.94 temperature 10.0 10 > th dose dependent sin 7 NA
69 31.97 humidity 90.0 720 < th dose independent rect. 18 2
74 32.00 precipitation 0.1 270 < th dose independent rect. 8 22
76 32.00 precipitation 0.1 270 < th dose dependent rect. 8 22
80 32.05 temperature 20.0 10 > th dose independent rect. 6 21
82 32.06 humidity 80.0 14400 > th dose independent rect. 6 1
86 32.08 wind 5.0 90 < th dose dependent rect. 6 9
87 32.09 precipitation 0.1 720 < th dose independent rect. 18 10
90 32.09 precipitation 0.1 720 < th dose dependent rect. 18 10
97 32.14 precipitation 0.1 90 < th dose independent rect. 11 19
98 32.14 precipitation 0.1 720 < th dose independent rect. 1 20
100 32.14 precipitation 0.1 90 < th dose dependent rect. 11 19
101 32.14 precipitation 0.1 720 < th dose dependent rect. 1 20
106 32.18 wind 7.0 90 < th dose dependent rect. 6 5
115 32.22 wind 3.0 90 < th dose independent rect. 6 9
116 32.22 precipitation 0.1 720 < th dose independent rect. 16 14
118 32.22 precipitation 0.1 720 < th dose dependent rect. 16 14
119 32.22 atmosphere 995.0 90 > th dose dependent rect. 11 19
125 32.25 humidity 80.0 14400 < th dose independent rect. 6 1
128 32.27 wind 5.0 90 < th dose dependent rect. 6 7
136 32.31 temperature 10.0 90 > th dose dependent rect. 6 5
138 32.32 atmosphere 1015.0 270 < th dose independent rect. 4 21
145 32.36 wind 3.0 90 < th dose independent rect. 6 7
150 32.38 wind 5.0 90 < th dose independent rect. 6 5
154 32.39 temperature 25.0 90 < th dose independent rect. 23 7
169 32.44 atmosphere 1015.0 90 < th dose independent rect. 20 15
182 32.47 temperature 30.0 30 < th dose dependent rect. 11 19
185 32.48 precipitation 0.1 720 < th dose independent rect. 18 19
188 32.48 precipitation 0.1 720 < th dose dependent rect. 18 19
196 32.51 wind 5.0 43200 < th dose dependent rect. 1 1
201 32.51 wind 5.0 90 < th dose dependent rect. 6 20
205 32.53 radiation 1.0 90 > th dose independent rect. 6 5
241 32.58 wind 1.0 270 > th dose independent rect. 9 21
248 32.59 atmosphere 1015.0 30 < th dose independent rect. 6 21
258 32.61 humidity 50.0 90 > th dose independent rect. 11 19
285 32.66 radiation 1.0 270 > th dose independent rect. 6 2
291 32.67 temperature 20.0 90 > th dose independent rect. 6 5
292 32.67 humidity 90.0 270 < th dose independent rect. 10 11
296 32.68 temperature 20.0 90 > th dose independent rect. 15 20
300 32.69 temperature 30.0 270 < th dose dependent rect. 1 3
305 32.69 temperature 25.0 90 < th dose dependent rect. 23 19
306 32.70 humidity 50.0 90 > th dose independent rect. 6 5
307 32.70 precipitation 0.1 90 < th dose independent rect. 6 5
310 32.70 precipitation 0.1 90 < th dose dependent rect. 6 5
317 32.71 temperature 10.0 90 > th dose independent rect. 6 5
318 32.71 atmosphere 995.0 90 > th dose independent rect. 6 5
319 32.71 atmosphere 1015.0 90 < th dose independent rect. 6 5
321 32.71 temperature 10.0 90 > th dose independent rect. 11 19
323 32.71 humidity 80.0 14400 < th dose dependent rect. 6 1
335 32.73 wind 3.0 30 < th dose independent rect. 6 21
357 32.75 temperature 25.0 90 < th dose dependent rect. 23 16
366 32.76 temperature 10.0 270 > th dose dependent rect. 6 2
379 32.78 precipitation 0.1 720 < th dose independent rect. 11 9
383 32.78 precipitation 0.1 720 < th dose dependent rect. 11 9
413 32.80 precipitation 0.1 720 < th dose independent rect. 11 17
419 32.80 precipitation 0.1 720 < th dose dependent rect. 11 17
431 32.81 atmosphere 995.0 10 > th dose dependent rect. 12 18
432 32.82 atmosphere 1015.0 270 < th dose independent rect. 13 11
436 32.82 temperature 30.0 90 < th dose dependent rect. 3 3
440 32.83 temperature 20.0 270 > th dose independent rect. 6 2
462 32.85 temperature 30.0 10 < th dose dependent rect. 16 14
480 32.87 humidity 90.0 90 < th dose independent rect. 6 5
501 32.88 wind 5.0 270 < th dose independent rect. 6 2
503 32.88 wind 3.0 14400 < th dose dependent rect. 22 7
512 32.89 wind 9.0 270 < th dose dependent rect. 6 2
518 32.90 wind 9.0 90 < th dose independent rect. 11 19
531 32.91 precipitation 0.1 720 < th dose independent rect. 8 14
540 32.91 precipitation 0.1 720 < th dose dependent rect. 8 14
546 32.92 wind 1.0 270 > th dose independent rect. 9 11
561 32.93 temperature 30.0 270 < th dose dependent rect. 2 1
577 32.95 wind 3.0 14400 < th dose dependent rect. 24 5
593 32.96 wind 3.0 14400 < th dose dependent rect. 3 3
609 32.98 wind 3.0 90 < th dose independent rect. 6 15
618 32.99 wind 1.0 90 > th dose independent rect. 11 19
628 33.00 atmosphere 1015.0 90 < th dose independent rect. 15 11
652 33.02 temperature 30.0 90 < th dose independent rect. 6 5
656 33.02 humidity 90.0 270 > th dose dependent rect. 18 4
668 33.03 temperature 10.0 720 > th dose dependent rect. 21 4
677 33.04 precipitation 0.1 270 < th dose independent rect. 6 2
678 33.04 wind 3.0 14400 < th dose independent rect. 24 5
684 33.04 humidity 70.0 720 > th dose independent rect. 5 13
685 33.04 atmosphere 995.0 90 > th dose independent rect. 11 19
688 33.04 precipitation 0.1 270 < th dose dependent rect. 6 2
702 33.05 temperature 10.0 270 > th dose independent rect. 6 2
704 33.05 temperature 30.0 270 < th dose independent rect. 6 2
705 33.05 humidity 50.0 270 > th dose independent rect. 6 2
707 33.05 atmosphere 995.0 270 > th dose independent rect. 6 2
708 33.05 atmosphere 1015.0 270 < th dose independent rect. 6 2
709 33.05 temperature 25.0 270 < th dose independent rect. 23 5
716 33.05 temperature 10.0 270 > th dose independent rect. 8 22
736 33.06 temperature 20.0 10 > th dose independent rect. 13 23
758 33.07 humidity 70.0 720 > th dose dependent rect. 5 13
768 33.08 precipitation 0.1 14400 > th dose independent rect. 8 9
770 33.08 precipitation 0.1 720 < th dose independent rect. 9 12
781 33.08 precipitation 0.1 720 < th dose dependent rect. 9 12
792 33.09 wind 3.0 14400 < th dose independent rect. 22 8
813 33.10 precipitation 0.1 14400 < th dose independent rect. 8 9
824 33.10 precipitation 0.1 14400 < th dose dependent rect. 8 9
832 33.11 precipitation 0.1 14400 > th dose independent rect. 5 15
833 33.11 precipitation 0.1 14400 < th dose independent rect. 5 15
840 33.11 temperature 30.0 90 < th dose dependent rect. 19 11
844 33.11 precipitation 0.1 14400 < th dose dependent rect. 5 15
863 33.12 atmosphere 1015.0 10 < th dose independent rect. 20 15
865 33.12 precipitation 0.1 720 < th dose independent rect. 16 23
875 33.12 precipitation 0.1 720 < th dose dependent rect. 16 23
898 33.14 wind 3.0 14400 < th dose independent rect. 3 2
899 33.14 radiation 40.0 270 < th dose independent rect. 6 2
922 33.15 temperature 25.0 10 < th dose dependent rect. 20 22
945 33.17 humidity 90.0 270 > th dose independent rect. 18 4
968 33.17 precipitation 0.1 14400 > th dose dependent rect. 6 11
970 33.17 wind 9.0 270 < th dose dependent rect. 4 21