Os04g0495900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0495900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 365.13 | 0.898 | 8.63 | 6.72 | 0.334 | 54.8 | -0.708 | -329 | -0.53 | 16.7 | 1 | 7 | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 387.73 | 0.923 | 9.75 | 0.103 | 0.23 | -- | -1.16 | -- | -0.545 | 17.4 | -- | -- | -- | -- |
| 389.5 | 0.924 | 9.74 | 0.109 | 0.269 | -- | -- | -- | -0.549 | 15 | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 393.66 | 0.927 | 9.75 | 0.0977 | -- | -- | -- | -- | -0.555 | -- | -- | -- | -- | -- |
| 389.82 | 0.924 | 9.75 | -- | 0.267 | -- | -- | -- | -0.561 | 15 | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 393.91 | 0.926 | 9.75 | -- | -- | -- | -- | -- | -0.566 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 349.93 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 2 | 350.39 | temperature | 25 | 30 | > th | dose independent | rect. | 7 | 1 |
| 5 | 354.37 | temperature | 25 | 90 | > th | dose dependent | rect. | 20 | 12 |
| 9 | 356.49 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 6 | 3 |
| 11 | 357.35 | humidity | 90 | 30 | < th | dose independent | rect. | 7 | 1 |
| 12 | 357.45 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 7 | 2 |
| 14 | 357.81 | radiation | 20 | 10 | > th | dose independent | rect. | 8 | 1 |
| 22 | 359.74 | temperature | 25 | 720 | > th | dose dependent | rect. | 3 | 2 |
| 23 | 359.79 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 7 | 3 |
| 28 | 359.97 | temperature | 25 | 270 | > th | dose dependent | rect. | 3 | 5 |
| 37 | 360.37 | temperature | 30 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 51 | 360.99 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 2 |
| 58 | 361.28 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 5 |
| 61 | 361.34 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 8 | 14 |
| 73 | 361.77 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 6 | 4 |
| 78 | 362.11 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 4 |
| 84 | 362.28 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 7 | 22 |
| 93 | 362.58 | temperature | 30 | 270 | > th | dose dependent | rect. | 18 | 15 |
| 94 | 362.59 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 10 | 12 |
| 95 | 362.61 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 15 | 22 |
| 109 | 363.19 | radiation | 30 | 270 | > th | dose independent | rect. | 7 | 1 |
| 125 | 363.20 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 130 | 363.35 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 10 | 14 |
| 131 | 363.35 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 8 | 18 |
| 134 | 363.42 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 12 | 10 |
| 136 | 363.60 | atmosphere | 995 | 1440 | > th | dose independent | sin | 19 | NA |
| 145 | 363.76 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 148 | 363.85 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 15 | 14 |
| 149 | 363.87 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 17 | 12 |
| 150 | 363.88 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 12 | 12 |
| 158 | 364.03 | wind | 3 | 10 | < th | dose independent | rect. | 7 | 1 |
| 160 | 364.05 | atmosphere | 995 | 1440 | > th | dose independent | sin | 12 | NA |
| 163 | 364.08 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 5 | 2 |
| 170 | 364.26 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 4 | 4 |
| 173 | 364.30 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 19 | 23 |
| 178 | 364.39 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 20 | 1 |
| 180 | 364.41 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 10 | 16 |
| 182 | 364.43 | atmosphere | 995 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 223 | 364.43 | atmosphere | 995 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 264 | 364.47 | wind | 5 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 266 | 364.50 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 268 | 364.51 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 6 | 3 |
| 281 | 364.56 | atmosphere | 995 | 1440 | > th | dose independent | sin | 7 | NA |
| 284 | 364.58 | atmosphere | 995 | 1440 | < th | dose independent | sin | 6 | NA |
| 303 | 364.66 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 15 | 11 |
| 304 | 364.66 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 12 | 14 |
| 307 | 364.68 | atmosphere | 995 | 1440 | < th | dose dependent | sin | 6 | NA |
| 310 | 364.69 | radiation | 30 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 334 | 364.76 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 370 | 364.92 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 393 | 364.94 | temperature | 25 | 90 | > th | dose independent | rect. | 16 | 16 |
| 397 | 364.96 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 12 | 17 |
| 400 | 364.97 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 460 | 365.13 | atmosphere | 995 | 1440 | > th | dose independent | no | NA | NA |
| 471 | 365.19 | atmosphere | 995 | 1440 | < th | dose independent | no | NA | NA |
| 478 | 365.19 | temperature | 25 | 90 | > th | dose independent | rect. | 16 | 8 |
| 663 | 365.19 | atmosphere | 995 | 1440 | < th | dose dependent | no | NA | NA |
| 919 | 365.35 | temperature | 25 | 10 | > th | dose independent | rect. | 16 | 7 |
| 939 | 365.53 | radiation | 1 | 30 | > th | dose independent | rect. | 7 | 1 |
| 958 | 365.65 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 959 | 365.65 | temperature | 25 | 90 | > th | dose independent | rect. | 16 | 11 |
| 961 | 365.66 | wind | 1 | 90 | < th | dose independent | rect. | 6 | 3 |