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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0495500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.35 (0.0345) R2 : 0.683
β1 : -3.72 (0.131) R2dD : 0.625 R2D : 0.404
β2 : 0.715 (0.0888) R2dC : 0.0451 R2C : 0.0574
β3 : 1.64 (0.101) R2dE : 0.198 R2E : 0.0396
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.287 (0.0739) R2dN8 : 0.0143 R2N8 : -0.0228
σ : 0.646
deviance : 192.31
__
_____
C
peak time of C : 4.1
E
wheather : temperature
threshold : 26
memory length : 2742
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
190.97 0.649 5.42 -4.32 0.721 1.88 -0.124 -2.3 -0.399 4.23 26.11 2742 -- --
192.36 0.646 5.36 -3.75 0.693 1.66 -0.205 -- -0.319 4.17 25.83 2723 -- --
191.01 0.644 5.42 -4.32 0.721 1.88 -- -2.32 -0.398 4.21 26.12 2742 -- --
192.31 0.646 5.35 -3.72 0.715 1.64 -- -- -0.287 4.1 26 2742 -- --
217.62 0.687 5.42 -4.14 -- 1.93 -- -1.45 -0.457 -- 25.32 2684 -- --
301.11 0.813 5.33 -3.17 0.889 -- 0.274 -- -0.214 3.42 -- -- -- --
301.34 0.813 5.33 -3.17 0.89 -- -- -- -0.215 3.45 -- -- -- --
217.74 0.687 5.39 -3.8 -- 1.84 -- -- -0.475 -- 23.7 2669 -- --
528.53 1.07 5.25 -- 0.857 0.942 -- -- 0.174 3.54 28.45 1542 -- --
345.82 0.869 5.33 -3.13 -- -- -- -- -0.192 -- -- -- -- --
566.55 1.11 5.25 -- 0.828 -- -- -- 0.138 3.46 -- -- -- --
554.15 1.1 5.22 -- -- 1.07 -- -- 0.306 -- 28.7 2637 -- --
604.99 1.15 5.25 -- -- -- -- -- 0.156 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 167.66 wind 9.0 43200 > th dose dependent rect. 20 1
2 167.94 atmosphere 1000.0 43200 < th dose dependent rect. 11 5
6 168.25 atmosphere 1000.0 43200 < th dose dependent rect. 14 1
21 168.61 radiation 1.0 43200 < th dose dependent rect. 20 6
28 168.78 humidity 80.0 43200 > th dose independent rect. 23 1
32 168.85 wind 9.0 43200 > th dose independent rect. 20 1
38 169.12 wind 9.0 43200 < th dose independent rect. 20 1
44 169.23 wind 7.0 43200 < th dose dependent rect. 9 1
46 169.25 precipitation 0.1 43200 > th dose dependent rect. 20 1
47 169.30 wind 9.0 43200 > th dose dependent rect. 20 9
48 169.31 wind 1.0 43200 > th dose dependent rect. 9 1
86 170.70 atmosphere 1000.0 43200 < th dose independent rect. 11 1
88 170.74 atmosphere 1000.0 43200 > th dose independent rect. 11 1
104 171.39 wind 9.0 43200 > th dose dependent rect. 20 4
105 171.41 wind 3.0 43200 > th dose dependent rect. 18 22
106 171.42 radiation 1.0 43200 < th dose dependent rect. 22 2
107 171.45 atmosphere 1000.0 43200 < th dose dependent sin 23 NA
118 171.66 atmosphere 995.0 43200 > th dose independent sin 20 NA
128 171.81 atmosphere 995.0 43200 < th dose independent rect. 14 1
134 171.88 atmosphere 995.0 43200 > th dose independent rect. 11 12
142 171.95 wind 3.0 43200 > th dose dependent rect. 15 21
149 171.98 atmosphere 995.0 43200 > th dose independent rect. 4 15
153 171.99 atmosphere 995.0 43200 > th dose independent rect. 4 17
158 172.02 atmosphere 995.0 43200 > th dose independent rect. 5 12
161 172.05 wind 5.0 43200 < th dose independent rect. 15 20
174 172.20 atmosphere 995.0 43200 > th dose independent sin 0 NA
176 172.21 atmosphere 995.0 43200 < th dose independent sin 20 NA
178 172.25 atmosphere 1000.0 43200 < th dose independent rect. 6 9
184 172.29 atmosphere 1000.0 43200 > th dose independent rect. 6 9
190 172.36 atmosphere 995.0 43200 < th dose independent rect. 11 12
202 172.47 atmosphere 1000.0 43200 > th dose independent rect. 6 1
213 172.52 atmosphere 1000.0 43200 < th dose independent rect. 7 1
231 172.56 radiation 1.0 43200 < th dose dependent rect. 1 1
240 172.60 atmosphere 1000.0 43200 > th dose independent rect. 14 1
284 172.82 wind 5.0 43200 > th dose independent rect. 15 19
293 172.88 atmosphere 995.0 43200 < th dose independent rect. 4 15
297 172.89 wind 5.0 43200 > th dose independent rect. 14 22
315 173.03 humidity 80.0 43200 < th dose independent rect. 22 1
322 173.13 atmosphere 1000.0 43200 > th dose independent rect. 21 2
323 173.13 atmosphere 995.0 43200 < th dose independent rect. 13 9
330 173.15 atmosphere 1000.0 43200 < th dose independent rect. 21 2
366 173.31 atmosphere 995.0 43200 < th dose independent sin 0 NA
388 173.48 wind 7.0 43200 < th dose dependent rect. 6 4
399 173.62 wind 3.0 43200 > th dose dependent rect. 3 13
404 173.67 wind 3.0 43200 > th dose dependent rect. 20 1
422 173.85 wind 9.0 43200 < th dose dependent rect. 2 13
434 173.90 wind 3.0 43200 > th dose dependent rect. 6 1
442 173.96 wind 1.0 43200 > th dose dependent rect. 6 4
454 174.06 wind 3.0 43200 > th dose dependent sin 3 NA
495 174.38 wind 3.0 43200 > th dose dependent rect. 24 16
496 174.40 wind 5.0 43200 < th dose independent rect. 18 23
536 174.66 wind 9.0 43200 > th dose independent rect. 20 8
562 174.83 wind 9.0 43200 < th dose dependent sin 4 NA
612 175.08 atmosphere 1000.0 43200 < th dose independent rect. 21 18
624 175.15 wind 5.0 43200 > th dose independent rect. 18 23
627 175.19 atmosphere 1000.0 43200 < th dose independent rect. 21 16
638 175.23 atmosphere 1000.0 43200 > th dose independent rect. 21 18
654 175.28 wind 9.0 43200 > th dose independent rect. 20 5
675 175.36 wind 3.0 43200 > th dose dependent rect. 17 15
705 175.48 wind 5.0 43200 > th dose independent rect. 6 1
756 175.74 wind 3.0 43200 > th dose dependent sin 12 NA
804 175.94 wind 9.0 43200 < th dose dependent rect. 20 19
827 176.02 wind 5.0 43200 < th dose independent rect. 24 23
840 176.07 atmosphere 1000.0 43200 < th dose independent sin 5 NA
844 176.09 wind 5.0 43200 > th dose independent rect. 24 23
884 176.22 atmosphere 1000.0 43200 > th dose independent sin 5 NA
892 176.25 wind 5.0 43200 < th dose independent no NA NA
935 176.42 wind 5.0 43200 > th dose independent no NA NA
973 176.53 wind 9.0 43200 < th dose dependent rect. 5 9
980 176.55 wind 9.0 43200 < th dose dependent rect. 18 18
981 176.55 wind 3.0 43200 > th dose dependent rect. 24 23