Os04g0495300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0495300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.8 | 0.378 | 11 | 0.463 | 1.1 | 0.955 | -0.151 | 0.693 | -0.168 | 18 | 25.7 | 1181 | -- | -- |
| 65.33 | 0.376 | 11 | 0.276 | 1.07 | 1.03 | -0.199 | -- | -0.214 | 17.9 | 25.7 | 1126 | -- | -- |
| 64.85 | 0.375 | 11 | 0.466 | 1.1 | 0.95 | -- | 0.697 | -0.168 | 18.1 | 25.69 | 1185 | -- | -- |
| 65.29 | 0.376 | 11 | 0.262 | 1.09 | 1.01 | -- | -- | -0.22 | 18 | 25.77 | 1184 | -- | -- |
| 83.18 | 0.425 | 11 | 0.467 | -- | 1.06 | -- | 0.613 | -0.179 | -- | 25.8 | 511 | -- | -- |
| 92.03 | 0.45 | 10.9 | 0.563 | 1.06 | -- | -0.00585 | -- | 0.106 | 18.8 | -- | -- | -- | -- |
| 92.03 | 0.449 | 10.9 | 0.563 | 1.06 | -- | -- | -- | 0.106 | 18.8 | -- | -- | -- | -- |
| 82.83 | 0.424 | 11 | 0.231 | -- | 1.11 | -- | -- | -0.274 | -- | 25.78 | 511 | -- | -- |
| 67.02 | 0.381 | 11 | -- | 1.08 | 1.05 | -- | -- | -0.241 | 18 | 25.8 | 1184 | -- | -- |
| 150.35 | 0.573 | 10.9 | 0.54 | -- | -- | -- | -- | 0.0858 | -- | -- | -- | -- | -- |
| 100.4 | 0.469 | 11 | -- | 1.05 | -- | -- | -- | 0.0436 | 18.8 | -- | -- | -- | -- |
| 84.18 | 0.427 | 11 | -- | -- | 1.14 | -- | -- | -0.308 | -- | 25.7 | 518 | -- | -- |
| 158.04 | 0.587 | 10.9 | -- | -- | -- | -- | -- | 0.0259 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.07 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 17 |
| 11 | 61.70 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 23 | 62.93 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 41 | 63.90 | temperature | 20 | 270 | > th | dose dependent | sin | 8 | NA |
| 45 | 64.10 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 19 |
| 48 | 64.35 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 55 | 64.50 | temperature | 10 | 270 | > th | dose dependent | sin | 8 | NA |
| 61 | 64.71 | radiation | 20 | 1440 | < th | dose dependent | rect. | 23 | 6 |
| 62 | 64.77 | radiation | 40 | 4320 | < th | dose dependent | rect. | 23 | 6 |
| 68 | 64.86 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 17 |
| 69 | 64.88 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 6 |
| 99 | 65.72 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 7 |
| 108 | 65.95 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 130 | 66.50 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 151 | 67.15 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 3 |
| 155 | 67.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 162 | 67.26 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 8 |
| 187 | 67.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 21 |
| 189 | 67.59 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 17 |
| 194 | 67.62 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 2 |
| 201 | 67.65 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 19 |
| 223 | 67.75 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 227 | 67.75 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 230 | 67.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 231 | 67.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 237 | 67.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 261 | 67.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 272 | 67.91 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 19 |
| 275 | 67.92 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 310 | 67.99 | temperature | 30 | 1440 | < th | dose dependent | sin | 19 | NA |
| 428 | 68.20 | temperature | 10 | 1440 | > th | dose dependent | sin | 18 | NA |
| 508 | 68.27 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 520 | 68.29 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 22 |
| 570 | 68.33 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 573 | 68.34 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 766 | 68.49 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 792 | 68.51 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 18 |
| 933 | 68.63 | temperature | 20 | 720 | > th | dose dependent | sin | 12 | NA |