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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0495000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF642 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.28 (0.023) R2 : 0.00458
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0702 (0.0485) R2dN8 : 0.00591 R2N8 : 0.00458
σ : 0.433
deviance : 86.22
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
81.12 0.423 3.26 0.11 0.359 0.317 -1.84 -1.92 0.114 11.4 0.3362 101 -- --
84.29 0.428 3.26 0.0552 0.309 0.291 0.144 -- 0.119 11.1 0.1249 119 -- --
83.27 0.425 3.26 0.103 0.343 0.303 -- -0.559 0.126 11.5 0.02227 122 -- --
84.26 0.428 3.27 -1.31e-05 0.313 0.267 -- -- 0.0894 11.1 0.1094 119 -- --
84.67 0.429 3.28 -0.0394 -- 0.17 -- -0.481 0.0729 -- 11.49 590 -- --
85.02 0.432 3.28 -0.0333 0.134 -- -0.316 -- 0.0621 4.87 -- -- -- --
85.22 0.432 3.28 -0.0317 0.138 -- -- -- 0.0639 5.73 -- -- -- --
84.99 0.429 3.28 -0.03 -- 0.163 -- -- 0.0713 -- 6.833 588 -- --
84.25 0.428 3.27 -- 0.313 0.274 -- -- 0.0847 11.1 0.08999 119 -- --
86.2 0.434 3.28 -0.0274 -- -- -- -- 0.0671 -- -- -- -- --
85.25 0.432 3.28 -- 0.137 -- -- -- 0.0674 5.74 -- -- -- --
85.02 0.429 3.28 -- -- 0.164 -- -- 0.0754 -- 6.75 585 -- --
86.22 0.433 3.28 -- -- -- -- -- 0.0702 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 69.29 temperature 25.0 90 > th dose independent rect. 1 3
2 69.38 radiation 1.0 43200 < th dose dependent rect. 3 1
3 69.41 temperature 25.0 90 > th dose dependent rect. 1 3
7 70.99 atmosphere 1000.0 30 > th dose independent rect. 3 23
21 71.32 wind 9.0 1440 < th dose independent rect. 3 1
22 71.32 temperature 10.0 1440 > th dose independent rect. 3 1
25 71.32 temperature 30.0 1440 < th dose independent rect. 3 1
29 71.32 humidity 50.0 1440 > th dose independent rect. 3 1
38 71.32 atmosphere 995.0 1440 > th dose independent rect. 3 1
39 71.32 radiation 1.0 1440 < th dose independent rect. 3 1
59 71.32 temperature 10.0 1440 > th dose independent rect. 4 23
67 71.33 atmosphere 1005.0 90 > th dose dependent rect. 2 1
68 71.36 temperature 25.0 90 > th dose independent rect. 2 1
73 71.46 wind 3.0 30 < th dose independent rect. 2 1
75 71.47 atmosphere 1005.0 30 > th dose independent rect. 2 1
82 71.51 wind 5.0 30 < th dose dependent rect. 2 1
89 71.55 temperature 10.0 30 > th dose independent rect. 2 1
91 71.55 temperature 30.0 30 < th dose independent rect. 2 1
92 71.55 humidity 50.0 30 > th dose independent rect. 2 1
96 71.55 atmosphere 1010.0 30 < th dose independent rect. 2 1
98 71.55 radiation 1.0 30 < th dose independent rect. 2 1
103 71.55 precipitation 0.1 30 < th dose independent rect. 2 1
104 71.55 temperature 10.0 30 > th dose independent rect. 3 23
105 71.55 radiation 1.0 30 < th dose dependent rect. 2 1
110 71.55 precipitation 0.1 30 < th dose dependent rect. 2 1
112 71.56 humidity 50.0 30 > th dose dependent rect. 2 1
116 71.62 humidity 90.0 30 > th dose independent rect. 2 1
121 71.67 atmosphere 1015.0 30 < th dose dependent rect. 2 1
123 71.72 temperature 30.0 30 < th dose dependent rect. 2 1
127 71.78 wind 1.0 30 > th dose independent rect. 2 1
135 71.96 wind 9.0 30 < th dose independent rect. 3 23
149 72.08 precipitation 0.1 30 < th dose independent rect. 3 23
150 72.08 precipitation 0.1 30 < th dose dependent rect. 3 23
194 73.12 atmosphere 1005.0 10 > th dose dependent rect. 2 3
210 74.69 humidity 50.0 30 > th dose independent rect. 3 23
219 74.98 atmosphere 995.0 720 > th dose independent rect. 23 16
224 75.07 wind 9.0 720 < th dose independent rect. 3 8
226 75.10 precipitation 0.1 720 < th dose independent rect. 15 8
227 75.10 precipitation 0.1 720 < th dose dependent rect. 15 8
233 75.24 temperature 10.0 720 > th dose independent rect. 15 8
234 75.24 temperature 10.0 720 > th dose independent rect. 23 16
238 75.34 temperature 10.0 720 > th dose independent rect. 3 8
239 75.34 atmosphere 995.0 720 > th dose independent rect. 3 8
240 75.34 temperature 10.0 720 > th dose independent rect. 11 16
242 75.38 humidity 50.0 720 > th dose independent rect. 3 8
247 75.50 atmosphere 995.0 720 > th dose independent rect. 15 8
250 75.54 atmosphere 995.0 720 > th dose independent rect. 11 16
251 75.58 precipitation 0.1 720 < th dose independent rect. 3 8
252 75.58 precipitation 0.1 720 < th dose dependent rect. 3 8
261 76.01 precipitation 0.1 720 < th dose independent rect. 11 16
262 76.01 precipitation 0.1 720 < th dose dependent rect. 11 16
263 76.02 atmosphere 1015.0 720 < th dose independent rect. 3 8
268 76.20 precipitation 0.1 720 < th dose independent rect. 23 16
269 76.20 precipitation 0.1 720 < th dose dependent rect. 23 16
309 76.93 temperature 10.0 30 > th dose dependent rect. 3 23
320 77.16 humidity 90.0 90 < th dose independent rect. 2 1
330 77.48 wind 3.0 30 < th dose dependent rect. 2 3
369 78.18 humidity 90.0 90 < th dose independent rect. 1 4
381 78.36 temperature 30.0 30 < th dose independent rect. 3 23
407 78.70 wind 9.0 720 < th dose dependent rect. 2 1
408 78.72 radiation 40.0 720 < th dose independent rect. 15 8
411 78.74 humidity 50.0 720 > th dose independent rect. 23 16
413 78.78 wind 1.0 720 > th dose independent rect. 15 8
414 78.78 wind 9.0 720 < th dose independent rect. 15 8
418 78.84 atmosphere 1015.0 30 < th dose independent rect. 3 23
426 78.94 radiation 20.0 43200 < th dose dependent rect. 23 1
440 79.12 wind 9.0 720 < th dose independent rect. 23 16
458 79.23 wind 9.0 30 < th dose dependent rect. 3 23
486 79.29 temperature 10.0 30 > th dose dependent rect. 5 21
490 79.34 wind 1.0 10 < th dose independent rect. 13 14
493 79.35 atmosphere 1000.0 10 > th dose independent rect. 14 12
501 79.39 temperature 25.0 720 < th dose independent rect. 21 4
510 79.44 radiation 40.0 30 < th dose independent rect. 14 12
515 79.47 wind 1.0 10 < th dose independent rect. 17 10
519 79.49 wind 1.0 10 < th dose independent rect. 21 6
531 79.57 wind 1.0 10 > th dose independent rect. 23 23
541 79.61 temperature 30.0 720 < th dose independent rect. 15 8
547 79.63 humidity 60.0 10 > th dose independent rect. 14 12
553 79.67 wind 9.0 10 < th dose independent rect. 14 12
559 79.72 atmosphere 1000.0 10 > th dose independent rect. 2 12
561 79.74 temperature 25.0 1440 < th dose independent rect. 1 1
565 79.75 wind 1.0 10 > th dose independent rect. 23 12
576 79.79 wind 9.0 10 < th dose independent rect. 5 21
581 79.83 temperature 10.0 10 > th dose independent rect. 2 12
583 79.83 temperature 10.0 10 > th dose independent rect. 14 12
585 79.83 atmosphere 1015.0 10 < th dose independent rect. 2 12
586 79.83 precipitation 0.1 10 < th dose independent rect. 2 12
587 79.83 precipitation 0.1 10 < th dose dependent rect. 2 12
588 79.84 wind 3.0 720 < th dose independent rect. 2 1
596 79.90 temperature 20.0 10 > th dose independent rect. 2 3
600 79.92 radiation 1.0 30 < th dose dependent rect. 2 12
608 79.94 atmosphere 995.0 720 > th dose independent rect. 3 23
616 79.97 atmosphere 995.0 720 > th dose independent rect. 14 1
621 79.98 radiation 1.0 10 < th dose independent rect. 2 12
631 80.00 wind 1.0 14400 < th dose dependent rect. 6 1
632 80.01 precipitation 0.1 10 < th dose independent rect. 14 12
634 80.01 precipitation 0.1 10 < th dose dependent rect. 14 12
648 80.05 humidity 50.0 10 > th dose independent rect. 2 12
659 80.08 atmosphere 995.0 720 > th dose independent rect. 15 23
661 80.08 temperature 25.0 720 > th dose dependent rect. 4 4
680 80.12 radiation 40.0 10 < th dose dependent rect. 14 12
704 80.14 temperature 10.0 720 > th dose independent rect. 14 1
705 80.14 atmosphere 1015.0 720 < th dose independent rect. 14 1
708 80.14 temperature 10.0 720 > th dose independent rect. 15 23
709 80.14 radiation 1.0 30 < th dose dependent rect. 2 10
711 80.17 precipitation 0.1 720 < th dose independent rect. 14 1
712 80.17 temperature 10.0 1440 > th dose independent rect. 3 12
715 80.17 temperature 10.0 1440 > th dose independent rect. 15 12
718 80.17 precipitation 0.1 720 < th dose dependent rect. 14 1
720 80.17 radiation 1.0 10 < th dose dependent rect. 2 4
721 80.17 radiation 1.0 30 < th dose dependent rect. 2 6
726 80.18 wind 1.0 720 > th dose independent rect. 14 1
746 80.19 temperature 10.0 30 > th dose independent rect. 5 21
757 80.20 wind 1.0 10 < th dose independent rect. 8 19
765 80.23 humidity 70.0 14400 > th dose independent rect. 8 1
767 80.23 wind 9.0 1440 < th dose independent rect. 3 3
768 80.23 temperature 10.0 1440 > th dose independent rect. 3 3
771 80.23 temperature 30.0 1440 < th dose independent rect. 3 3
775 80.23 humidity 50.0 1440 > th dose independent rect. 3 3
784 80.23 atmosphere 995.0 1440 > th dose independent rect. 3 3
785 80.23 radiation 20.0 1440 < th dose independent rect. 3 3
795 80.23 radiation 1.0 10 < th dose independent rect. 2 10
797 80.23 temperature 10.0 1440 > th dose independent rect. 6 21
800 80.23 precipitation 0.1 30 < th dose independent rect. 5 21
802 80.23 precipitation 0.1 30 < th dose dependent rect. 5 21
832 80.26 precipitation 0.1 720 < th dose independent rect. 2 1
833 80.26 radiation 1.0 10 < th dose independent rect. 2 6
837 80.26 precipitation 0.1 720 < th dose dependent rect. 2 1
841 80.27 temperature 30.0 720 < th dose independent rect. 15 22
847 80.30 wind 1.0 14400 < th dose independent rect. 6 1
851 80.31 humidity 70.0 14400 < th dose independent rect. 8 1
867 80.35 atmosphere 1015.0 1440 < th dose independent rect. 3 1
868 80.35 temperature 25.0 720 > th dose independent rect. 5 4
869 80.35 temperature 30.0 10 < th dose independent rect. 14 12
875 80.37 wind 9.0 720 < th dose independent rect. 14 1
878 80.37 temperature 30.0 720 < th dose independent rect. 3 8
886 80.38 temperature 25.0 720 > th dose independent rect. 4 7
887 80.38 radiation 10.0 10 < th dose independent rect. 14 12
888 80.38 humidity 80.0 14400 < th dose dependent rect. 7 2
892 80.39 wind 9.0 30 < th dose independent rect. 23 23
903 80.41 humidity 70.0 14400 > th dose independent rect. 4 5
905 80.41 humidity 70.0 14400 > th dose independent rect. 24 9
906 80.41 humidity 70.0 14400 > th dose independent rect. 22 11
907 80.41 temperature 30.0 720 < th dose independent rect. 15 14
911 80.42 wind 5.0 14400 < th dose independent rect. 11 1
920 80.42 temperature 25.0 270 < th dose independent rect. 20 11
928 80.44 humidity 80.0 14400 < th dose dependent rect. 5 4
930 80.45 temperature 30.0 720 < th dose independent rect. 17 10
943 80.48 temperature 30.0 30 < th dose independent rect. 2 12
946 80.48 radiation 10.0 10 < th dose independent rect. 5 21
948 80.48 wind 3.0 30 < th dose dependent rect. 22 5
992 80.56 radiation 1.0 720 < th dose dependent rect. 18 9
1000 80.58 atmosphere 1000.0 10 > th dose independent rect. 16 10