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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0494600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF642 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.0198) R2 : 0.0197
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.126 (0.0418) R2dN8 : 0.0254 R2N8 : 0.0197
σ : 0.374
deviance : 64.1
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
58.38 0.359 2.93 0.199 0.00564 3.84 -0.274 7.9 0.149 19.7 16.62 956 -- --
62.85 0.372 2.88 0.125 0.0595 0.0811 0.361 -- 0.142 11.1 16.62 956 -- --
58.46 0.356 2.93 0.205 0.0411 4.32 -- 8.87 0.149 14.6 16.22 728 -- --
62.71 0.369 2.87 0.205 0.0482 0.213 -- -- 0.197 11 27.8 1347 -- --
58.56 0.356 2.93 0.204 -- 4.33 -- 8.9 0.149 -- 16.23 734 -- --
62.87 0.372 2.88 0.119 0.0591 -- 0.364 -- 0.14 11 -- -- -- --
63.33 0.373 2.88 0.136 0.0703 -- -- -- 0.143 13.6 -- -- -- --
62.7 0.369 2.87 0.203 -- 0.247 -- -- 0.186 -- 24.1 965 -- --
63.55 0.371 2.88 -- 0.0671 0.119 -- -- 0.145 13.8 76.18 1739 -- --
63.64 0.373 2.88 0.133 -- -- -- -- 0.141 -- -- -- -- --
63.82 0.374 2.89 -- 0.0679 -- -- -- 0.128 13.5 -- -- -- --
63.66 0.372 2.88 -- -- 0.158 -- -- 0.153 -- 24.44 862 -- --
64.1 0.374 2.89 -- -- -- -- -- 0.126 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 55.32 radiation 10.0 1440 < th dose dependent rect. 21 1
5 55.39 temperature 10.0 1440 > th dose independent rect. 21 1
8 55.39 temperature 30.0 1440 < th dose independent rect. 21 1
12 55.39 humidity 50.0 1440 > th dose independent rect. 21 1
18 55.39 atmosphere 995.0 1440 > th dose independent rect. 21 1
19 55.39 radiation 1.0 1440 < th dose independent rect. 21 1
39 55.39 temperature 10.0 1440 > th dose independent rect. 22 23
42 55.46 temperature 25.0 30 > th dose independent rect. 20 1
43 55.50 atmosphere 1005.0 30 > th dose dependent rect. 20 1
44 55.54 temperature 20.0 30 > th dose dependent rect. 20 1
46 55.56 wind 3.0 30 > th dose independent rect. 20 1
47 55.57 humidity 80.0 30 > th dose independent rect. 20 1
50 55.58 humidity 90.0 30 < th dose independent rect. 20 1
52 55.61 atmosphere 1005.0 30 > th dose independent rect. 20 1
55 55.64 wind 5.0 30 < th dose independent rect. 20 1
60 55.65 temperature 10.0 30 > th dose independent rect. 20 1
62 55.65 temperature 30.0 30 < th dose independent rect. 20 1
63 55.65 humidity 50.0 30 > th dose independent rect. 20 1
67 55.65 atmosphere 1010.0 30 < th dose independent rect. 20 1
69 55.65 radiation 1.0 30 < th dose independent rect. 20 1
74 55.65 precipitation 0.1 30 < th dose independent rect. 20 1
75 55.65 temperature 10.0 30 > th dose independent rect. 21 23
76 55.65 wind 1.0 30 > th dose dependent rect. 20 1
77 55.65 radiation 1.0 30 < th dose dependent rect. 20 1
82 55.65 precipitation 0.1 30 < th dose dependent rect. 20 1
83 55.68 humidity 50.0 30 > th dose dependent rect. 20 1
85 55.72 wind 9.0 30 < th dose dependent rect. 20 1
89 55.96 humidity 90.0 30 < th dose dependent rect. 20 1
90 55.99 atmosphere 1015.0 30 < th dose dependent rect. 20 1
96 56.29 temperature 30.0 30 < th dose dependent rect. 20 1
111 56.77 wind 9.0 1440 < th dose independent rect. 21 1
148 57.38 wind 9.0 30 < th dose independent rect. 21 23
152 57.96 wind 3.0 10 < th dose dependent rect. 11 2
158 58.32 wind 9.0 30 < th dose independent rect. 11 23
160 58.33 wind 9.0 4320 > th dose independent rect. 3 1
192 58.33 wind 9.0 4320 > th dose dependent rect. 3 1
200 58.33 temperature 20.0 1440 < th dose dependent rect. 12 1
225 58.34 temperature 20.0 1440 < th dose independent rect. 12 1
235 58.48 temperature 20.0 1440 < th dose independent rect. 12 6
239 58.53 temperature 20.0 1440 > th dose independent rect. 17 1
240 58.53 temperature 20.0 1440 < th dose independent rect. 17 1
243 58.55 temperature 20.0 1440 > th dose independent rect. 15 3
255 58.61 humidity 90.0 1440 > th dose independent rect. 12 1
256 58.62 humidity 90.0 1440 > th dose dependent rect. 12 1
260 58.66 wind 1.0 270 < th dose dependent rect. 7 5
261 58.68 temperature 25.0 10 < th dose independent rect. 10 2
264 58.71 temperature 25.0 90 < th dose independent rect. 10 1
270 58.77 temperature 20.0 1440 > th dose independent rect. 12 2
279 58.84 temperature 25.0 270 < th dose dependent rect. 8 1
282 58.87 humidity 80.0 30 < th dose independent rect. 10 1
283 58.88 wind 1.0 30 > th dose independent rect. 10 1
284 58.88 wind 9.0 30 < th dose independent rect. 10 1
285 58.88 temperature 10.0 30 > th dose independent rect. 10 1
287 58.88 humidity 50.0 30 > th dose independent rect. 10 1
289 58.88 atmosphere 995.0 30 > th dose independent rect. 10 1
290 58.88 atmosphere 1015.0 30 < th dose independent rect. 10 1
291 58.88 radiation 1.0 30 > th dose independent rect. 10 1
292 58.88 precipitation 0.1 30 < th dose independent rect. 10 1
294 58.88 temperature 10.0 30 > th dose independent rect. 11 23
295 58.88 temperature 20.0 1440 < th dose dependent rect. 19 1
296 58.88 atmosphere 995.0 30 > th dose dependent rect. 10 1
297 58.88 precipitation 0.1 30 < th dose dependent rect. 10 1
299 58.89 wind 5.0 30 < th dose independent rect. 10 1
303 58.89 humidity 90.0 30 < th dose dependent rect. 10 1
307 58.90 wind 9.0 30 < th dose dependent rect. 10 1
311 58.91 temperature 10.0 30 > th dose dependent rect. 10 1
322 58.94 radiation 1.0 30 > th dose dependent rect. 10 1
325 58.96 humidity 90.0 1440 < th dose independent rect. 12 1
332 58.99 radiation 40.0 30 < th dose independent rect. 10 1
336 59.00 wind 1.0 720 < th dose dependent rect. 7 1
346 59.03 temperature 20.0 1440 < th dose dependent rect. 17 1
352 59.04 atmosphere 1015.0 30 < th dose dependent rect. 10 1
354 59.05 temperature 20.0 1440 < th dose dependent rect. 12 8
357 59.06 temperature 20.0 1440 < th dose dependent rect. 17 3
360 59.07 temperature 10.0 1440 > th dose independent rect. 11 1
364 59.07 atmosphere 995.0 1440 > th dose independent rect. 11 1
367 59.07 precipitation 0.1 1440 < th dose independent rect. 11 1
368 59.07 temperature 10.0 1440 > th dose independent rect. 12 23
372 59.07 precipitation 0.1 1440 < th dose dependent rect. 11 1
377 59.09 humidity 50.0 30 > th dose dependent rect. 10 1
378 59.10 radiation 40.0 30 < th dose dependent rect. 10 1
380 59.10 temperature 20.0 720 < th dose dependent rect. 7 4
393 59.14 wind 1.0 30 > th dose dependent rect. 10 1
404 59.18 temperature 20.0 720 > th dose independent rect. 7 8
489 59.45 temperature 20.0 1440 < th dose dependent rect. 7 16
490 59.46 wind 1.0 720 < th dose independent rect. 7 1
495 59.48 wind 3.0 30 < th dose dependent rect. 8 5
514 59.52 wind 9.0 14400 < th dose independent rect. 5 5
546 59.56 wind 1.0 720 < th dose independent rect. 7 5
556 59.58 wind 9.0 4320 < th dose independent rect. 5 3
588 59.67 temperature 30.0 90 < th dose dependent rect. 10 1
631 59.80 temperature 20.0 1440 < th dose dependent sin 20 NA
654 59.84 temperature 30.0 10 < th dose dependent rect. 10 2
672 59.86 temperature 20.0 720 < th dose independent rect. 7 1
710 59.92 wind 7.0 4320 < th dose independent rect. 5 1
719 59.93 temperature 20.0 720 < th dose dependent rect. 24 1
740 59.99 atmosphere 1005.0 43200 < th dose independent rect. 8 1
746 60.00 wind 9.0 4320 < th dose independent rect. 7 1
748 60.00 atmosphere 1005.0 43200 < th dose independent rect. 20 1
752 60.00 wind 9.0 14400 < th dose independent rect. 24 10
759 60.03 atmosphere 1005.0 43200 > th dose independent rect. 9 2
762 60.03 wind 3.0 30 < th dose dependent rect. 11 7
764 60.04 atmosphere 1005.0 43200 < th dose independent rect. 19 3
778 60.05 atmosphere 1005.0 43200 < th dose independent rect. 8 5
782 60.05 atmosphere 1005.0 43200 < th dose independent rect. 7 7
798 60.07 atmosphere 1010.0 43200 < th dose dependent rect. 19 1
811 60.08 atmosphere 1005.0 43200 < th dose independent rect. 17 18
837 60.09 wind 7.0 43200 > th dose dependent rect. 4 2
853 60.10 atmosphere 1010.0 43200 < th dose dependent rect. 15 1
879 60.11 wind 1.0 1440 > th dose independent rect. 20 1
892 60.11 atmosphere 1010.0 43200 < th dose dependent sin 17 NA
938 60.12 atmosphere 1010.0 43200 < th dose dependent sin 15 NA
980 60.13 atmosphere 1005.0 43200 < th dose independent sin 3 NA