Os04g0493300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0493300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.17 | 0.385 | 7.84 | -0.301 | 1.99 | 2.18 | -1.26 | -3.67 | 0.0538 | 18.7 | 0.8499 | 748 | -- | -- |
| 77.5 | 0.41 | 7.8 | -0.249 | 1.94 | 2.16 | 0.127 | -- | 0.116 | 18.9 | 1.55 | 769 | -- | -- |
| 67.22 | 0.382 | 7.86 | -0.309 | 2.14 | 2.47 | -- | -2.05 | 0.0465 | 19 | 0.84 | 801 | -- | -- |
| 72.86 | 0.398 | 7.85 | -0.339 | 2.24 | 2.6 | -- | -- | 0.0562 | 19.1 | 0.52 | 810 | -- | -- |
| 87.3 | 0.438 | 7.82 | -0.549 | -- | 0.349 | -- | -0.43 | -0.0562 | -- | 0.84 | 801 | -- | -- |
| 85.99 | 0.435 | 7.84 | -0.567 | 0.519 | -- | 0.000972 | -- | -0.0608 | 21.6 | -- | -- | -- | -- |
| 85.99 | 0.434 | 7.84 | -0.567 | 0.519 | -- | -- | -- | -0.0608 | 21.6 | -- | -- | -- | -- |
| 88.49 | 0.44 | 7.83 | -0.555 | -- | 0.346 | -- | -- | -0.0582 | -- | 0.84 | 801 | -- | -- |
| 72.85 | 0.398 | 7.85 | -- | 2.39 | 2.93 | -- | -- | 0.122 | 19.9 | 0.5296 | 944 | -- | -- |
| 101.91 | 0.472 | 7.83 | -0.563 | -- | -- | -- | -- | -0.0618 | -- | -- | -- | -- | -- |
| 94.46 | 0.455 | 7.83 | -- | 0.518 | -- | -- | -- | 0.00232 | 21.5 | -- | -- | -- | -- |
| 96.61 | 0.459 | 7.81 | -- | -- | 0.349 | -- | -- | 0.0034 | -- | 0.84 | 801 | -- | -- |
| 110.26 | 0.49 | 7.81 | -- | -- | -- | -- | -- | 0.000574 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.67 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 11 | 65.58 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 34 | 66.21 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 58 | 66.76 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 80 | 67.22 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 21 |
| 81 | 67.22 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 85 | 67.23 | radiation | 1 | 720 | < th | dose dependent | sin | 22 | NA |
| 91 | 67.33 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 23 |
| 99 | 67.44 | radiation | 1 | 720 | < th | dose independent | sin | 23 | NA |
| 101 | 67.46 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 23 |
| 108 | 67.53 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 21 |
| 112 | 67.57 | humidity | 70 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 116 | 67.61 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 19 |
| 121 | 67.65 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 122 | 67.65 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 127 | 67.72 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 11 |
| 128 | 67.73 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 15 |
| 129 | 67.74 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 11 |
| 133 | 67.76 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 23 |
| 136 | 67.77 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 23 |
| 145 | 67.83 | radiation | 1 | 720 | > th | dose independent | sin | 23 | NA |
| 147 | 67.83 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 14 |
| 151 | 67.84 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 19 |
| 179 | 68.03 | humidity | 70 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 185 | 68.07 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 23 |
| 190 | 68.10 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 208 | 68.20 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 209 | 68.21 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 215 | 68.24 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 216 | 68.24 | radiation | 1 | 720 | > th | dose independent | rect. | 4 | 15 |
| 261 | 68.24 | radiation | 1 | 720 | < th | dose independent | rect. | 12 | 23 |
| 264 | 68.25 | humidity | 90 | 720 | > th | dose dependent | rect. | 8 | 16 |
| 277 | 68.28 | radiation | 1 | 720 | < th | dose independent | sin | 15 | NA |
| 300 | 68.35 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 23 |
| 326 | 68.45 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 23 |
| 332 | 68.47 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 333 | 68.47 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 340 | 68.49 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 23 |
| 354 | 68.54 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 23 |
| 394 | 68.68 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 7 |
| 406 | 68.71 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 409 | 68.73 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 426 | 68.78 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 437 | 68.78 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 453 | 68.80 | radiation | 1 | 720 | < th | dose dependent | rect. | 12 | 23 |
| 543 | 68.98 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 582 | 69.04 | humidity | 90 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 738 | 69.26 | humidity | 70 | 720 | > th | dose dependent | sin | 18 | NA |
| 747 | 69.27 | humidity | 60 | 720 | > th | dose dependent | sin | 16 | NA |
| 750 | 69.28 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 818 | 69.42 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |